PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN10095.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

FAR1

Protein Properties

Length: 679aa MW: 77723.4 Da PI: 7.9542

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN10095.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.1	4.4e-21	62	155	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 +fY+e+Ak+ GFs+r+++++ + + t+r fvC + g++ ++++++k +r+r+++r+gC+a ++++k++ +w+vt + ++HnHel KHN10095.1 62 EFYSEFAKRSGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPVKTSTESKPQRNRKSSRCGCQAYMRISKTTefgAPEWRVTGFANHHNHELL 155 6************9998877356667999*********99999999***************9988888************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.2E-18	62	155	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.0E-19	278	369	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.186	553	589	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	5.6E-6	560	587	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.2E-5	564	591	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 679 aa Download sequence Send to blast
MSEEAGSMLV VYDDPSDQRS LSLDDASSTE ESPDETRLSL ETTNDAIPYI GQRFATHDAA 60 YEFYSEFAKR SGFSIRRHRT EGKDGVGKGL TRRYFVCHRA GNTPVKTSTE SKPQRNRKSS 120 RCGCQAYMRI SKTTEFGAPE WRVTGFANHH NHELLEPNQV RFLPAYRTIS DADKNRILMF 180 AKTGISVHQM MRLMELEKCV EPGYLPFTEK DVRNLLQSFR KLDPEEESLD LLRMCRNIKE 240 KDPNFKFEYT LDANNRLENI AWSYASSTQL YDIFGDAVVF DTSHRLTAFD MPLGIWVGIN 300 NYGMPCFFGC TLLRDETVRS FSWALKAFLG FMNGKAPQTI LTDQNICLKE ALSTEMPTTK 360 HAFCIWMIVA KFPSWFNAVL GERYNDWKAE FYRLYNLESV EDFELGWREM ACSFGLHSNR 420 HMVNLYSSRS LWALPFLRSH FLAGMTTTGQ SKSINAFIQR FLSAQTRLAH FVEQVAVAVD 480 FKDQTGEQQT MQQNLQNVCL KTGAPMESHA ATILTPFAFS KLQEQLVLAA HYASFSIEDG 540 FLVRHHTKAE GGRKVYWAPQ EGIISCSCHQ FEFTGILCRH SLRVLSTGNC FQIPDRYLPI 600 RWRRINMPSS KLLQSAPNDH AERVKLLQNM VSSLMTESAK SKERLDIATE QVTLLLSRIR 660 EQPISLQVGR DISSINRNL

Sequence ? help Back to Top

Protein Sequence Length: 679 aa Download sequence Send to blast

MSEEAGSMLV VYDDPSDQRS LSLDDASSTE ESPDETRLSL ETTNDAIPYI GQRFATHDAA  60
YEFYSEFAKR SGFSIRRHRT EGKDGVGKGL TRRYFVCHRA GNTPVKTSTE SKPQRNRKSS  120
RCGCQAYMRI SKTTEFGAPE WRVTGFANHH NHELLEPNQV RFLPAYRTIS DADKNRILMF  180
AKTGISVHQM MRLMELEKCV EPGYLPFTEK DVRNLLQSFR KLDPEEESLD LLRMCRNIKE  240
KDPNFKFEYT LDANNRLENI AWSYASSTQL YDIFGDAVVF DTSHRLTAFD MPLGIWVGIN  300
NYGMPCFFGC TLLRDETVRS FSWALKAFLG FMNGKAPQTI LTDQNICLKE ALSTEMPTTK  360
HAFCIWMIVA KFPSWFNAVL GERYNDWKAE FYRLYNLESV EDFELGWREM ACSFGLHSNR  420
HMVNLYSSRS LWALPFLRSH FLAGMTTTGQ SKSINAFIQR FLSAQTRLAH FVEQVAVAVD  480
FKDQTGEQQT MQQNLQNVCL KTGAPMESHA ATILTPFAFS KLQEQLVLAA HYASFSIEDG  540
FLVRHHTKAE GGRKVYWAPQ EGIISCSCHQ FEFTGILCRH SLRVLSTGNC FQIPDRYLPI  600
RWRRINMPSS KLLQSAPNDH AERVKLLQNM VSSLMTESAK SKERLDIATE QVTLLLSRIR  660
EQPISLQVGR DISSINRNL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN10095.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015038	0.0	AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006588528.1	0.0	protein FAR1-RELATED SEQUENCE 11
Refseq	XP_028184456.1	0.0	protein FAR1-RELATED SEQUENCE 11
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A0B2PLU4	0.0	A0A0B2PLU4_GLYSO; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	I1L7C4	0.0	I1L7C4_SOYBN; Uncharacterized protein
STRING	GLYMA10G00380.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF594	30	113

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]