PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN09998.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 172aa    MW: 19773.6 Da    PI: 9.7333
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN09998.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.53.8e-111061255
                HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
         HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55
                r+  + +E++RR+++++ f++L +++P++   +s+   s  +   +A++YIk+Lq
  KHN09998.1 10 RTDRKFIEQNRRNHMKDLFFKLNSVVPHQ---SSREaISRPDQIGEATNYIKNLQ 61
                6777889*********************8...56666*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.38E-6665No hitNo description
SuperFamilySSF474591.31E-12674IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.232860IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-111074IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-71061IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.7E-41466IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MENNPSSSSR TDRKFIEQNR RNHMKDLFFK LNSVVPHQSS REAISRPDQI GEATNYIKNL  60
QIKLEKMKEK KNNLIDIKRS KNVSMNMGLL KSPQFKIQQM GSTLEVFLIT GLDCQFMFNE  120
TVRVLQEEGS DVVNASYTVV ENEVFHTIHC QVGESANGAL RISEKLKKYF NG
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN09998.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028187653.11e-125transcription factor bHLH162-like
TrEMBLA0A0B2PQP61e-124A0A0B2PQP6_GLYSO; Transcription factor bHLH162
STRINGGLYMA13G24730.21e-122(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9063498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.13e-37bHLH family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]