PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN09966.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

HB-other

Protein Properties

Length: 1796aa MW: 201191 Da PI: 5.2013

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN09966.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.6	1e-18	48	103	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle+Le++++ ++yps+++r eL++klgL++rq ++WF+ rR k+kk KHN09966.1 48 PKRQMKTPFQLETLEKAYAVDNYPSETMRVELSEKLGLSDRQLQMWFCHRRLKDKK 103 69****************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.4E-18	27	103	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.89E-17	36	103	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.811	44	104	IPR001356	Homeobox domain
SMART	SM00389	1.2E-18	46	108	IPR001356	Homeobox domain
Pfam	PF00046	2.2E-16	48	103	IPR001356	Homeobox domain
CDD	cd00086	1.00E-14	49	103	No hit	No description
SMART	SM00571	9.4E-20	557	616	IPR018501	DDT domain
PROSITE profile	PS50827	15.679	557	616	IPR018501	DDT domain
Pfam	PF02791	1.9E-16	559	613	IPR018501	DDT domain
Pfam	PF05066	1.7E-15	739	807	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	5.8E-9	945	987	IPR028942	WHIM1 domain
Pfam	PF15613	1.5E-12	1128	1200	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1796 aa Download sequence Send to blast
MESEACSEGE NNLKRGGTDD DSNENNNNNN NNGSSGKIVN CNEGQSKPKR QMKTPFQLET 60 LEKAYAVDNY PSETMRVELS EKLGLSDRQL QMWFCHRRLK DKKDLPSKKP PRKVLAEPLP 120 DSPRDDPRLG LELANEYGSG SGSGSSPYAR VEPLNVAPLG VPGYYESPQA KLEHRAIACV 180 EAQLGEPLRE NGPILGVEFD PLPPDAFGAP IAVTEQQKLP SFAYDSKIYE RHDARTNKAM 240 ARTFRDNQFL PNKSAIRSDA SGQFSQSHLH DLVEGSVRNP PFAHGNEHLP RIHATKGHSS 300 RVRLLSQQDK QLIPYQSPSR DDDVAPQREM YPNIANVGKN SHFTDHQIVG PENLHALHSG 360 QVLHNNATRI EKKRKSDDAQ DVEAHEMKIR KELEKQDNLR RKSEERTRKE MERQDRERKK 420 EEERLMRERQ REEERARREQ KREIERREKF LLKENLKAEK MRQREELRKE RDAERRKAAL 480 EKATARRMAK ESMELIEDEQ LEMMELAASS KGFSSIVHLD FDTLQHLESF RDSLSVFPPK 540 SVKLRKPFAI KPWINSENNV GNLLMVWRFF INFADVLELW SFTLDEFVQA FHDYDSRLLG 600 EIHVALLKVI IKDIEDVART PSTGLGANQN GAANSGGGHP EIVEGAYAWG FDIRNWHKHL 660 NLLTWPEIFR QLALSAGYGP QLKKRSISWS YANNKDEGRN CEDIISTLRN GSAAENAVAK 720 MHERGLLAPR RSRHRLTPGT VKFAAFHVLS LEGEKGLNVL ELAEKIQKSG LRDLTTSKTP 780 EASISVALTR DAKLFERIAP STYCVREAFR KDPADAESIL SDARKKIQIF EKGFLAGEDT 840 DDIEREESES DEIDEDPEVD DLVNLSSANR TSEQCDDFSS NGKANLGHNV ELQGEFDKDL 900 PCFPESGSKN ADAPIAVTGQ PGAVEDLNVG NLGEDNMEID ESKPGESWVL GLAEGEYSDL 960 SVEERLNALV VLVGVANEGN SIRVVLEDRL EAANALKKQM WAESQVDKVR LKDDTFSKSD 1020 FPSINGNKVE IQYSCPVMEG KQSPLIGINI GNNNNNNNNN VPSPSIAENQ KAVFGAQSQS 1080 IEKHSSAQDL CTGPDNPQTQ SLGQYSKRSR SQWKSYISHM AEEMYVYRSL PLGQDRRRNR 1140 YWQFVASASS NDPGSGRIFV EYLDGYWRLI DTEEAFDALL NSLDSRGIRE SHLRLMLQKV 1200 ESSFKENVRK NTQCSKIGSI GETCVKNEAD ETDSSPDRHT GSDSPSSTLC GLNSDTSETS 1260 SSFKIELGKS ESDKKSALRR YQDFQKWMWK ECYNSSILCA MKYGKKRCKP QVVMCDICLN 1320 PYFFEDSHCS GCHRTFPSNS GFSFSKHAFQ CGDKSSKDIC ILDSLPLRTR LLKAMLAFIE 1380 ASVLPEALKS NWTEDIRRHW SVKLSKSSSI EELLQILTLL ERALKQDFLS STFSTTGEQL 1440 GLNSMSKSAA QTSTDPESVA VLPWVPLTTS AVSLRLLEFD ASIVYVPHEK PEPCEEKEDR 1500 VYIKLPSRYN PSKSSKVAEA ADLDRDEFMK VKSAPVKIVQ SNNKRGRGSR DKGRGKKLSK 1560 TKQNTGRRGA KVAGNAGQRI KKQGVGSQGQ AGGRGRRTVR KRRVGKKAVE DLLMGHRDAS 1620 HSSSIGRESL RSLDDDWDDE KASPMTPIHM GAANSNNSIE EVESDDNVEA MESDDNVQAM 1680 ESDDKVQAME SDDNVQAAES DDNGQAVEYD QGNWEIGFNG APSRWSRDLV GGISDEDEDE 1740 DAEASEDDND NGIGIENNEE EDSEADAMSE EGSDGTANRI VNEESSDSDV SEDSSD

Sequence ? help Back to Top

Protein Sequence Length: 1796 aa Download sequence Send to blast

MESEACSEGE NNLKRGGTDD DSNENNNNNN NNGSSGKIVN CNEGQSKPKR QMKTPFQLET  60
LEKAYAVDNY PSETMRVELS EKLGLSDRQL QMWFCHRRLK DKKDLPSKKP PRKVLAEPLP  120
DSPRDDPRLG LELANEYGSG SGSGSSPYAR VEPLNVAPLG VPGYYESPQA KLEHRAIACV  180
EAQLGEPLRE NGPILGVEFD PLPPDAFGAP IAVTEQQKLP SFAYDSKIYE RHDARTNKAM  240
ARTFRDNQFL PNKSAIRSDA SGQFSQSHLH DLVEGSVRNP PFAHGNEHLP RIHATKGHSS  300
RVRLLSQQDK QLIPYQSPSR DDDVAPQREM YPNIANVGKN SHFTDHQIVG PENLHALHSG  360
QVLHNNATRI EKKRKSDDAQ DVEAHEMKIR KELEKQDNLR RKSEERTRKE MERQDRERKK  420
EEERLMRERQ REEERARREQ KREIERREKF LLKENLKAEK MRQREELRKE RDAERRKAAL  480
EKATARRMAK ESMELIEDEQ LEMMELAASS KGFSSIVHLD FDTLQHLESF RDSLSVFPPK  540
SVKLRKPFAI KPWINSENNV GNLLMVWRFF INFADVLELW SFTLDEFVQA FHDYDSRLLG  600
EIHVALLKVI IKDIEDVART PSTGLGANQN GAANSGGGHP EIVEGAYAWG FDIRNWHKHL  660
NLLTWPEIFR QLALSAGYGP QLKKRSISWS YANNKDEGRN CEDIISTLRN GSAAENAVAK  720
MHERGLLAPR RSRHRLTPGT VKFAAFHVLS LEGEKGLNVL ELAEKIQKSG LRDLTTSKTP  780
EASISVALTR DAKLFERIAP STYCVREAFR KDPADAESIL SDARKKIQIF EKGFLAGEDT  840
DDIEREESES DEIDEDPEVD DLVNLSSANR TSEQCDDFSS NGKANLGHNV ELQGEFDKDL  900
PCFPESGSKN ADAPIAVTGQ PGAVEDLNVG NLGEDNMEID ESKPGESWVL GLAEGEYSDL  960
SVEERLNALV VLVGVANEGN SIRVVLEDRL EAANALKKQM WAESQVDKVR LKDDTFSKSD  1020
FPSINGNKVE IQYSCPVMEG KQSPLIGINI GNNNNNNNNN VPSPSIAENQ KAVFGAQSQS  1080
IEKHSSAQDL CTGPDNPQTQ SLGQYSKRSR SQWKSYISHM AEEMYVYRSL PLGQDRRRNR  1140
YWQFVASASS NDPGSGRIFV EYLDGYWRLI DTEEAFDALL NSLDSRGIRE SHLRLMLQKV  1200
ESSFKENVRK NTQCSKIGSI GETCVKNEAD ETDSSPDRHT GSDSPSSTLC GLNSDTSETS  1260
SSFKIELGKS ESDKKSALRR YQDFQKWMWK ECYNSSILCA MKYGKKRCKP QVVMCDICLN  1320
PYFFEDSHCS GCHRTFPSNS GFSFSKHAFQ CGDKSSKDIC ILDSLPLRTR LLKAMLAFIE  1380
ASVLPEALKS NWTEDIRRHW SVKLSKSSSI EELLQILTLL ERALKQDFLS STFSTTGEQL  1440
GLNSMSKSAA QTSTDPESVA VLPWVPLTTS AVSLRLLEFD ASIVYVPHEK PEPCEEKEDR  1500
VYIKLPSRYN PSKSSKVAEA ADLDRDEFMK VKSAPVKIVQ SNNKRGRGSR DKGRGKKLSK  1560
TKQNTGRRGA KVAGNAGQRI KKQGVGSQGQ AGGRGRRTVR KRRVGKKAVE DLLMGHRDAS  1620
HSSSIGRESL RSLDDDWDDE KASPMTPIHM GAANSNNSIE EVESDDNVEA MESDDNVQAM  1680
ESDDKVQAME SDDNVQAAES DDNGQAVEYD QGNWEIGFNG APSRWSRDLV GGISDEDEDE  1740
DAEASEDDND NGIGIENNEE EDSEADAMSE EGSDGTANRI VNEESSDSDV SEDSSD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	96	103	RRLKDKKD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN09966.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	0.0	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028189622.1	0.0	homeobox-DDT domain protein RLT1-like isoform X2
TrEMBL	A0A0B2PKP8	0.0	A0A0B2PKP8_GLYSO; Homeobox protein 10
STRING	GLYMA13G24370.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2523	33	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	0.0	homeobox-1

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933]