PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN09910.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TCP
Protein Properties Length: 385aa    MW: 44173.8 Da    PI: 6.8845
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN09910.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP129.72.9e-401242772135
         TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..........ssssasec............eaess 78 
                 +gk+drhski T++g+RdRR+Rls+e+a+rfF Lqd+L fdk+skt+eWLl+qak +i  l++           +ss++sec            + +++
  KHN09910.1 124 PGKRDRHSKINTARGLRDRRMRLSLEVAKRFFGLQDMLNFDKASKTVEWLLNQAKVEINRLVKEkkkndhhhqsCSSASSECeegvssldevvvSRDQE 222
                 79**************************************************************99988888875555566666665544322222222 PP

         TCP  79 sssasnsssgkaaksaa.kskksqksaasalnlakesrakarararertrekmriknk 135
                 ++++   +++++ ++    + k++++ +++  lake r++ar+rarertrekmr + +
  KHN09910.1 223 QQQQ---QQQEKVEKVVkRRVKNSRKISAFDPLAKECRERARERARERTREKMRSRGV 277
                 2222...2222333333356666677777899999******************99866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.4E-44125274IPR005333Transcription factor, TCP
PROSITE profilePS5136932.352126184IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.756254271IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MQSQSSDTFP SHNGNDPISC YDPAFYYYNS RPFSPIDSES NPTSKQNNNN NCDLVPSPTP  60
LSFFHFPSSP FEDTQNQILL EQHHDFLLQF HHQSLPKDPV PQPAVITTMD PFVKKSDQIQ  120
RKRPGKRDRH SKINTARGLR DRRMRLSLEV AKRFFGLQDM LNFDKASKTV EWLLNQAKVE  180
INRLVKEKKK NDHHHQSCSS ASSECEEGVS SLDEVVVSRD QEQQQQQQQE KVEKVVKRRV  240
KNSRKISAFD PLAKECRERA RERARERTRE KMRSRGVLAE ESKQCGEETN QDLIQLGSSN  300
PFETGDQESG AKTSHSVDVH PSSLDVIATE AKEQSYRAVK EHNDDDDDSL VVLSKWSPSL  360
IFNNSGFSQD HQFAEFQSLG KPWET
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1258270RARERARERTREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN09910.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028228912.10.0transcription factor DICHOTOMA-like
TrEMBLA0A0B2PLB10.0A0A0B2PLB1_GLYSO; Transcription factor TB1
STRINGGLYMA04G22407.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65642851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.22e-26TCP family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]