PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN09887.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family SBP
Protein Properties Length: 1033aa    MW: 114381 Da    PI: 7.0296
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN09887.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.17.7e-41147223177
                 --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
         SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                 +Cqve+C+adls++k+yhrrhkvC++hska+++lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+ 
  KHN09887.1 147 VCQVEDCRADLSNVKDYHRRHKVCDMHSKATQALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTL 223
                 6*************************************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.105.1E-32142209IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.017145222IPR004333Transcription factor, SBP-box
SuperFamilySSF1036127.06E-38146227IPR004333Transcription factor, SBP-box
PfamPF031106.7E-29148221IPR004333Transcription factor, SBP-box
Gene3DG3DSA:1.25.40.201.8E-5775915IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484033.51E-6803915IPR020683Ankyrin repeat-containing domain
CDDcd002043.92E-7805915No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1033 aa     Download sequence    Send to blast
MEARLEGKNQ YLYGPVVPEM KSVGKRTLEW DLNDWKWDGD LFTARQLNSV PSDCRSRELF  60
PADPEILVSG DASNNLSSAY DDVNLGEGKR ELEKRRRGVI DEGGVEMNDG AGSLNLNLGG  120
QVYPIMEGEE KSGKKTKLTA STSSRAVCQV EDCRADLSNV KDYHRRHKVC DMHSKATQAL  180
VGNVMQRFCQ QCSRFHVLQE FDEGKRSCRR RLAGHNKRRR KTLPDATVVN GGSLNEEKGS  240
SYLLMSLLRI LSNMHSNGSD NMRNQDVLSH LLRNLASLTG TINGRNIVSL LEGSQDLVKA  300
GTSGAAQNVP NTNSNGPEPS SPLYSSIKMD DGLIHRNPPE SLVQCETTPA NDMAKECIAS  360
GSDEVGSLKS PSVPLSTNVL LSMDSLPPQS VAAQTTVGRI GLSNIDLNNV YDDVQDYVEN  420
TRNCRPPLPS GNGSLDHPLL VQCDSLKSSP PQTSRNSDST STQSPSSSSG EAQSRTDRIV  480
FKLFGKAPND FPHALRSQIL NWLSHSPTEI ESYIRPGCIM LTIYLRLENS AWEELCYNLG  540
PSLRKLAASN DCFWRTGWIY TRVQHSVAFL YNGQVVLDAP LRLKSPQSCQ ILCVKPLAVS  600
ASSCAQFVLK GFNFLLSNSR LLCALEGKYL VQDNCYDLID SVDAANGHHE LQHLRFSCHV  660
PNVTGRGFIE VVEDNGLSSC SFPFIVAEQE ICSEICKLEN VIEAAETADD IQIKTKLMEE  720
KTQALYFIQE MGWLLHRSRV KVRLGPVAPV QDNFHFNRFM WLVGFSMDHD WCAVMKKLLN  780
IVFEGTVDTG DHASVELALL EMGLLHKAVK RNCRPMVELL LKFVPVKASD GGDSNEKQIN  840
KSPDRFLFRP DTVGPARLTP LHVAASMHGS ENVLDALTDD PGMVGSEAWK SAQDATGLTP  900
YDYASLRGYY SYIQLVQRKT SNTCKNPQHV LDIPGNLVDS NTKQKQSDGH RSSKVLSLQT  960
EKIETTAMRH CGLCQQKLVY GGMRRALVFR PAMLSMVAIA AVCVCVALLF KSSPKVYYVF  1020
QPFSWESLEY GSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-29139221284squamosa promoter binding protein-like 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN09887.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028205051.10.0squamosa promoter-binding-like protein 12
TrEMBLA0A0B2PQL90.0A0A0B2PQL9_GLYSO; Squamosa promoter-binding-like protein 12
STRINGGLYMA15G21860.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15393495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60030.10.0squamosa promoter-binding protein-like 12
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]