PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN09862.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | GATA | ||||||||
Protein Properties | Length: 550aa MW: 61056.5 Da PI: 7.0993 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 49.9 | 4.4e-16 | 7 | 41 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+t+TplWR+gp ++ LCnaCG ++r kg+ KHN09862.1 7 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41 ****************88888***********997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 5.3E-10 | 1 | 55 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.43E-11 | 5 | 46 | No hit | No description |
CDD | cd00202 | 8.82E-17 | 6 | 54 | No hit | No description |
Pfam | PF00320 | 7.2E-14 | 7 | 41 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.2 | 7 | 40 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 2.3E-12 | 7 | 41 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE pattern | PS00344 | 0 | 7 | 32 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF13919 | 1.5E-8 | 292 | 386 | IPR028020 | ASX homology domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 550 aa Download sequence Send to blast |
MGKQGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLANYTPLHA RAENIDYEDQ 60 KVSRVKSISL NKNTEVKLVK RKQNYGNAAS GGFVPDYSQG YRKVVDEDTS NRSSSGSAVS 120 NSESCAQFGG PDASDLTGPA QSVVWDAMVP SKKRTCAGRP KPSSVEKLTR DLCTILHEQQ 180 SYFSASSEED LLFESDTPMV SVEIGHGSIL IRHPSSIARD EESEASSLSV DNKQCLMNEA 240 YSFSSTIPIY SDRSSMNFSS HGVEKIKNSA GQIMQQEKLE RHVFPHQDKS QLEKLQVHGN 300 HDSPLCSIDL NDVVNYEEFM RNLTNEQQQQ LLKYLPVVDT AKFPDSLRNM FNSFQFKENL 360 IYFQQLLGEG VFNISLLGAK PEEWKTLERL ALSNLSKSKW VEHYNFLKKC ENKSGKSIGL 420 GSTAMESSNV TTGKRMREHD SRNQNIPELK TTMRSPKRVI IKPPSCEVKE VVEEGSSFSP 480 KSLFALPHGV GGLHMLDSFN FVGESSEDLL LEVPSNSSFP QAELLHPSLS YGARQVSTTS 540 SSVHSPVTHP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN09862.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003549942.1 | 0.0 | GATA transcription factor 26 | ||||
Refseq | XP_028210830.1 | 0.0 | GATA transcription factor 26-like | ||||
Swissprot | Q8W4H1 | 1e-147 | GAT26_ARATH; GATA transcription factor 26 | ||||
TrEMBL | A0A445G6U8 | 0.0 | A0A445G6U8_GLYSO; GATA transcription factor 26 | ||||
TrEMBL | I1MV65 | 0.0 | I1MV65_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA17G15610.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4424 | 31 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17570.3 | 1e-150 | GATA transcription factor 26 |
Publications ? help Back to Top | |||
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