PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KHN09599.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 234aa MW: 26456.7 Da PI: 6.359 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 24.3 | 5.5e-08 | 124 | 164 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri +++ L++l+P +K++ a++L +A+ Y+k L KHN09599.1 124 ARHRRERISEKIRILQRLVPGG-----TKMDTASMLDEAILYVKFL 164 699*****************87.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.481 | 115 | 164 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.71E-13 | 120 | 173 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.2E-12 | 121 | 170 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.0E-11 | 121 | 174 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.75E-10 | 121 | 169 | No hit | No description |
Pfam | PF00010 | 2.5E-5 | 125 | 164 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0016787 | Molecular Function | hydrolase activity | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 234 aa Download sequence Send to blast |
MDTNQNITTT GNHENMGRDE HNNIILHDHH HHNQIPTPHY NHHPLHIVQP SSNVAPSFVS 60 DVLGVVHFEE EDEDEEEVEE ELGAMKEMMY KMAVMQPVDI DPASVRKPKR RNVRISDDPQ 120 SVAARHRRER ISEKIRILQR LVPGGTKMDT ASMLDEAILY VKFLKRQIRL LQSTSSPLIN 180 CTGAAPNSDY WPFAPNIFHS SITNTNASMD IPVIGMEFNT RGHGHAGDAS SIHL |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KHN09599.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006581762.1 | 1e-130 | transcription factor HEC3 | ||||
TrEMBL | A0A0R0JHC2 | 1e-174 | A0A0R0JHC2_SOYBN; Uncharacterized protein | ||||
TrEMBL | A0A445KA16 | 1e-174 | A0A445KA16_GLYSO; Transcription factor IND | ||||
STRING | GLYMA06G15730.2 | 1e-130 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF651 | 34 | 141 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G00120.1 | 5e-47 | bHLH family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|