PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN09471.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

NF-YB

Protein Properties

Length: 214aa MW: 23680.7 Da PI: 9.9127

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN09471.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	179.1	4e-56	69	163	1	95
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 vreqdr+lPian+srimkk+lPan+ki+kdaketvqecvsefisf+tseasdkcqrekrktingddllwa+atlGfedy++plk+yl++yre ++ KHN09471.1 69 VREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYMDPLKIYLTRYREGDT 163 69*****************************************************************************************9665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	3.4E-53	66	176	IPR009072	Histone-fold
SuperFamily	SSF47113	2.17E-39	72	173	IPR009072	Histone-fold
Pfam	PF00808	5.3E-28	75	139	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	2.9E-20	103	121	No hit	No description
PROSITE pattern	PS00685	0	106	122	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	2.9E-20	122	140	No hit	No description
PRINTS	PR00615	2.9E-20	141	159	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
KRTVVIGFSL DLNRLHLAFF SSVRFSHRSR AKYKFVSTQP RVPASMADGP ASPGGGSHES 60 GDHSPRSNVR EQDRYLPIAN ISRIMKKALP ANGKIAKDAK ETVQECVSEF ISFITSEASD 120 KCQREKRKTI NGDDLLWAMA TLGFEDYMDP LKIYLTRYRE GDTKGSAKGG DSSAKRDVQP 180 SPNAQLAHQG SFSQNVTYPN SQGQHMMVPM QGPE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	9e-48	69	160	1	92	Transcription factor HapC (Eurofung)
4g92_B	9e-48	69	160	1	92	Transcription factor HapC (Eurofung)
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN09471.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003521372.1	1e-123	nuclear transcription factor Y subunit B-10
Refseq	XP_028225788.1	1e-123	nuclear transcription factor Y subunit B-10-like
Swissprot	Q8VYK4	4e-84	NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBL	A0A0S3RYL3	1e-134	A0A0S3RYL3_PHAAN; Uncharacterized protein
STRING	GLYMA19G36220.2	1e-142	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2545	33	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37060.3	2e-86	nuclear factor Y, subunit B8

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]