PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN09256.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 309aa    MW: 33964.1 Da    PI: 10.1228
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN09256.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS191.45.8e-592222046255
        GRAS  46 teALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRi 144
                   AL+ar+++s+ + y+ l++++ + ++s++ ++a++ ++ vsP++kfsh+taNqaI +a++ge+rvHiiD+di+qGlQWp L++ LasR+++  s+Ri
  KHN09256.1  22 RAALQARVLSSCIGSYSPLTAKSVTLTQSQKIFNAFQSYNSVSPLVKFSHFTANQAIFQALDGEDRVHIIDLDIMQGLQWPGLFHILASRSKKIRSVRI 120
                 579**********************99************************************************************************ PP

        GRAS 145 TgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvve 243
                 Tg+gs    s+e l +tg+rLa+fA++lg+pfef ++  k  +  el++L v+p+Ea++V++++  h l+d ++s       +L+l+ +l+Pk+++ ve
  KHN09256.1 121 TGFGS----SSELLDSTGRRLADFASSLGLPFEFFPVEGKIGSVTELSQLGVRPNEAIVVHWMH--HCLYDITGSDLG----TLRLLTQLRPKLITTVE 209
                 *****....99*************************8777777779****************99..777777777777....***************** PP

        GRAS 244 qeadhnsesFle 255
                 q+++h  +sFl+
  KHN09256.1 210 QDLSHA-GSFLA 220
                 *****4.55555 PP
2GRAS64.62e-20221299295374
        GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 +n+va  g +r+ + + le+W + l++aGF+pv+l+ + a+qa+lll +++++gy++ ee+gsl lgWkd +L+ +SaW+
  KHN09256.1 221 RNIVAVGGPKRTGEVK-LERWGDELKRAGFGPVSLRGNPAAQASLLLGMFPWRGYTLVEENGSLKLGWKDLSLLIASAWQ 299
                 79********988877.**************************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098530.61309IPR005202Transcription factor GRAS
PfamPF035142.0E-5622220IPR005202Transcription factor GRAS
PfamPF035146.8E-18221299IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MLQSLVPRSP RTSNPNAMKT KRAALQARVL SSCIGSYSPL TAKSVTLTQS QKIFNAFQSY  60
NSVSPLVKFS HFTANQAIFQ ALDGEDRVHI IDLDIMQGLQ WPGLFHILAS RSKKIRSVRI  120
TGFGSSSELL DSTGRRLADF ASSLGLPFEF FPVEGKIGSV TELSQLGVRP NEAIVVHWMH  180
HCLYDITGSD LGTLRLLTQL RPKLITTVEQ DLSHAGSFLA RNIVAVGGPK RTGEVKLERW  240
GDELKRAGFG PVSLRGNPAA QASLLLGMFP WRGYTLVEEN GSLKLGWKDL SLLIASAWQP  300
SDLMITYPD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-1152430066380Protein SCARECROW
5b3h_A1e-1152430065379Protein SCARECROW
5b3h_D1e-1152430065379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN09256.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311590.0KT031159.1 Glycine max clone HN_CCL_171 GRAS transcription factor (Glyma11g10220.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003537749.10.0scarecrow-like protein 23
RefseqXP_028189861.10.0scarecrow-like protein 23
SwissprotQ9FHZ11e-131SCL23_ARATH; Scarecrow-like protein 23
TrEMBLA0A0B2PIS90.0A0A0B2PIS9_GLYSO; Scarecrow-like protein 23
STRINGGLYMA11G10220.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.11e-133GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  3. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]