PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN09251.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 437aa    MW: 49479 Da    PI: 5.8198
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN09251.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS454.47e-139104341374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l++lLl+cA++v++g+le+a+++L+++s laspdgd+mqR+a+yf+e La r++++++++ +al++++ +    s+e+ ++klf+e++P+lk++++++N
  KHN09251.1  10 LIHLLLTCANHVAAGNLENANTTLEQISLLASPDGDTMQRIATYFMESLADRILKTWPGIHRALNSTRIT--LLSDEILVQKLFFELFPFLKVAFVLTN 106
                 689*************************************************************999987..7************************** PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                 qaI ea+ege+ +HiiD+++ + +QW+aLlq L+ Rpegpp+lRiTgv++    +ke l ++++rL++ Ae+l++pf+fn+ v+++le+l++++Lrvk+
  KHN09251.1 107 QAIIEAMEGEKVIHIIDLNAAEAAQWIALLQVLSGRPEGPPHLRITGVHQ----KKEILDQVAHRLTEEAEKLDIPFQFNP-VVSKLENLDFDKLRVKT 200
                 **************************************************....9**************************.799************** PP

        GRAS 199 gEalaVnlvlqlhrll..............................................................desvsleserdevLklvksls 235
                 gEala++++lqlh+ll                                                              ++s+    + +++L+++++ls
  KHN09251.1 201 GEALAISSILQLHTLLawddetmqrksplllktsngihlqrvlpmgqstlgdlvekdmvngytlspdstssspaslttSNSM----NMESFLNALWGLS 295
                 **********************************************************************998755322222....5578********* PP

        GRAS 236 PkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaa 334
                 Pkv+vv+eq+++hn++++++r+leal+ ++alfd+le++++r+s er  vE++l+g+ei+n++aceg+er+erhe+lekW +r++ aGF++vpls++ +
  KHN09251.1 296 PKVMVVTEQDCNHNGPTLMDRLLEALYSFAALFDCLESTVSRTSLERLRVEKMLFGEEIKNIIACEGSERKERHEKLEKWFQRFDLAGFGNVPLSYFGM 394
                 *************************************************************************************************** PP

        GRAS 335 kqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  qa++ l+ ++ +gyr+ +e+g+++++W+drp++s+SaWr
  KHN09251.1 395 LQARRFLQSYGCEGYRMRDENGCVLICWEDRPMYSISAWR 434
                 ***************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.1291414IPR005202Transcription factor GRAS
PfamPF035142.4E-13610434IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MKSEERGLYL IHLLLTCANH VAAGNLENAN TTLEQISLLA SPDGDTMQRI ATYFMESLAD  60
RILKTWPGIH RALNSTRITL LSDEILVQKL FFELFPFLKV AFVLTNQAII EAMEGEKVIH  120
IIDLNAAEAA QWIALLQVLS GRPEGPPHLR ITGVHQKKEI LDQVAHRLTE EAEKLDIPFQ  180
FNPVVSKLEN LDFDKLRVKT GEALAISSIL QLHTLLAWDD ETMQRKSPLL LKTSNGIHLQ  240
RVLPMGQSTL GDLVEKDMVN GYTLSPDSTS SSPASLTTSN SMNMESFLNA LWGLSPKVMV  300
VTEQDCNHNG PTLMDRLLEA LYSFAALFDC LESTVSRTSL ERLRVEKMLF GEEIKNIIAC  360
EGSERKERHE KLEKWFQRFD LAGFGNVPLS YFGMLQARRF LQSYGCEGYR MRDENGCVLI  420
CWEDRPMYSI SAWRSRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-41243611381Protein SCARECROW
5b3h_A2e-41243610380Protein SCARECROW
5b3h_D2e-41243610380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN09251.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003537745.10.0scarecrow-like protein 3 isoform X1
RefseqXP_028190169.10.0scarecrow-like protein 3 isoform X1
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A445I0A00.0A0A445I0A0_GLYSO; Scarecrow-like protein 3 isoform B
STRINGGLYMA11G10170.30.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23833484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  2. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  3. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  4. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]