PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KHN09107.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | BBR-BPC | ||||||||
Protein Properties | Length: 337aa MW: 37455.4 Da PI: 9.8626 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 401.3 | 1.2e-122 | 1 | 337 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkg..yyepa..aslkenl..glqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensl 91 mdd g+re r+k+ +y++a + l +++ +q+m++iaerda+i+ernla+sekkaa+aerdma++qrd+a+aern+a++erdn++++l+++e+sl KHN09107.1 1 MDDAGHREngRHKAadQYKSAqgQWLMQHQpsMKQIMAMIAERDAAIQERNLAISEKKAAYAERDMAYMQRDAAIAERNNAMLERDNAIATLQYRETSL 99 99****9999999889999555544444432145****************************************************************9 PP GAGA_bind 92 a....salpvgvqvlsgtksidslqq.lse.pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesad 184 + ++p+g+q+++g+k++++ qq +++ p+++d ++++re++++e+lp ++e+ ++ +rak+pke+k+ ++kk++k+ kkvkkes+d KHN09107.1 100 SsgsmPSCPPGCQISRGVKHVHHPQQqVHHiPNMGDASYNTREMHTTEVLPAAPIPSETGKS------RRAKRPKEPKSAPPNKKTSKPSKKVKKESED 192 9888889*****************9955669*****************99955544444333......4667888888998999999999999999999 PP GAGA_bind 185 er............................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRi 255 + ska++k +dl+ln+v++Dest+P+PvCsCtG+lrqCYkWGnGGWqSaCCttt+S+yPLP+++++r+aR+ KHN09107.1 193 LNnmfgkahewksgqemvnggddlnkqlavSKADWKGQDLGLNQVAYDESTMPAPVCSCTGVLRQCYKWGNGGWQSACCTTTLSMYPLPAVPNKRHARV 291 555999999****************************************************************************************** PP GAGA_bind 256 agrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 +grKmS++af+klL++Laae +dlsnpvDLkdhWAkHGtn+++ti+ KHN09107.1 292 GGRKMSGSAFNKLLSRLAAESHDLSNPVDLKDHWAKHGTNRYITIK 337 *********************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF06217 | 4.4E-106 | 1 | 337 | IPR010409 | GAGA-binding transcriptional activator |
SMART | SM01226 | 5.2E-173 | 1 | 337 | IPR010409 | GAGA-binding transcriptional activator |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 337 aa Download sequence Send to blast |
MDDAGHRENG RHKAADQYKS AQGQWLMQHQ PSMKQIMAMI AERDAAIQER NLAISEKKAA 60 YAERDMAYMQ RDAAIAERNN AMLERDNAIA TLQYRETSLS SGSMPSCPPG CQISRGVKHV 120 HHPQQQVHHI PNMGDASYNT REMHTTEVLP AAPIPSETGK SRRAKRPKEP KSAPPNKKTS 180 KPSKKVKKES EDLNNMFGKA HEWKSGQEMV NGGDDLNKQL AVSKADWKGQ DLGLNQVAYD 240 ESTMPAPVCS CTGVLRQCYK WGNGGWQSAC CTTTLSMYPL PAVPNKRHAR VGGRKMSGSA 300 FNKLLSRLAA ESHDLSNPVD LKDHWAKHGT NRYITIK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KHN09107.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT093610 | 0.0 | BT093610.1 Soybean clone JCVI-FLGm-24C8 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006581036.1 | 0.0 | uncharacterized protein LOC100809369 isoform X1 | ||||
Refseq | XP_006581037.1 | 0.0 | uncharacterized protein LOC100809369 isoform X1 | ||||
Refseq | XP_006581039.1 | 0.0 | uncharacterized protein LOC100809369 isoform X1 | ||||
Refseq | XP_006581040.1 | 0.0 | uncharacterized protein LOC100809369 isoform X1 | ||||
Refseq | XP_006581042.1 | 0.0 | uncharacterized protein LOC100809369 isoform X1 | ||||
Refseq | XP_025984487.1 | 0.0 | uncharacterized protein LOC100809369 isoform X1 | ||||
Refseq | XP_028234720.1 | 0.0 | protein BASIC PENTACYSTEINE6-like | ||||
Refseq | XP_028234721.1 | 0.0 | protein BASIC PENTACYSTEINE6-like | ||||
Refseq | XP_028234722.1 | 0.0 | protein BASIC PENTACYSTEINE6-like | ||||
Refseq | XP_028234723.1 | 0.0 | protein BASIC PENTACYSTEINE6-like | ||||
Refseq | XP_028234724.1 | 0.0 | protein BASIC PENTACYSTEINE6-like | ||||
Refseq | XP_028234725.1 | 0.0 | protein BASIC PENTACYSTEINE6-like | ||||
Swissprot | Q8L999 | 1e-153 | BPC6_ARATH; Protein BASIC PENTACYSTEINE6 | ||||
TrEMBL | A0A0B2PNG6 | 0.0 | A0A0B2PNG6_GLYSO; Protein BASIC PENTACYSTEINE6 | ||||
TrEMBL | I1K7L4 | 0.0 | I1K7L4_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA06G02880.4 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6905 | 34 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G42520.1 | 1e-138 | basic pentacysteine 6 |
Publications ? help Back to Top | |||
---|---|---|---|
|