PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN09093.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family E2F/DP
Protein Properties Length: 301aa    MW: 33830.5 Da    PI: 9.2977
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN09093.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP84.58.2e-27157222171
     E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                 r+++sL+llt+kf++l++ +++g+++ln  a+ L   +v  ++RRiYDi+NVLe+++liek++kn+i+wkg
  KHN09093.1 157 RYDSSLGLLTKKFVSLIQDAKDGTLDLNRTAEIL---EV--QKRRIYDITNVLEGVGLIEKTSKNHIQWKG 222
                 6899******************************...99..****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.3E-29154223IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467857.44E-18157220IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013724.1E-35157222IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023194.4E-25159222IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MVYVREAQKG AQKVRPKRKR KGRGGVCIRT ELTAFFALVL AATPYQTFTF TSLFSFLLLY  60
ITVLLFHTQT LSLVSSISLQ IHSPFPNMSQ RYDNNVFKSH INNIQLAPGI TETLHLPPPL  120
QTEPTIRGKQ NGKSKGPRNA KSANADSPNS TAVNNCRYDS SLGLLTKKFV SLIQDAKDGT  180
LDLNRTAEIL EVQKRRIYDI TNVLEGVGLI EKTSKNHIQW KGCDGLGPQE LEDQVNSLKA  240
EVDSLYAEES ELDDCISKDD RKFEDDSAKR MKLMDPSWNS DPIRKRGVGL LESQHDEKKS  300
F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A9e-26156223674PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN09093.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0970030.0BT097003.1 Soybean clone JCVI-FLGm-15J6 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025984601.11e-121transcription factor E2FC isoform X4
TrEMBLA0A0B2PN840.0A0A0B2PN84_GLYSO; Transcription factor E2FC
STRINGGLYMA06G02738.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118852529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G47870.23e-49E2F/DP family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]