PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KHN08994.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | YABBY | ||||||||
Protein Properties | Length: 217aa MW: 24562.8 Da PI: 4.9918 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 198.4 | 3.1e-61 | 7 | 163 | 3 | 166 |
YABBY 3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlksnvekeesastsvs 97 +f+ +eq+Cy+qC+fCntil+vsvP +sl++vvtvrCGhCt+llsvn+ kas +lla+ shl+ + + + +k+ +++ s+++ +++++++ KHN08994.1 7 LFDLPEQICYIQCGFCNTILMVSVPCSSLSMVVTVRCGHCTNLLSVNMLKASfipfHLLASLSHLEPKESSPEEDANKTLNSHSASMMTYSDCEEED-- 103 6899********************************************9999888899999999765544444444444444333333333333332.. PP YABBY 98 seklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPki 166 +++ + v++PPekrqr Psayn+fikeei+r+ka+nP++sh+eafs+aaknWa fP+ KHN08994.1 104 --------IIPMSH-HVVNKPPEKRQRTPSAYNCFIKEEIKRLKAENPEMSHKEAFSTAAKNWANFPQT 163 ........222332.3489************************************************86 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.6E-63 | 11 | 164 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 6.28E-10 | 109 | 163 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 5.0E-7 | 114 | 164 | IPR009071 | High mobility group box domain |
CDD | cd01390 | 1.21E-5 | 121 | 164 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 217 aa Download sequence Send to blast |
MSTLTRLFDL PEQICYIQCG FCNTILMVSV PCSSLSMVVT VRCGHCTNLL SVNMLKASFI 60 PFHLLASLSH LEPKESSPEE DANKTLNSHS ASMMTYSDCE EEDIIPMSHH VVNKPPEKRQ 120 RTPSAYNCFI KEEIKRLKAE NPEMSHKEAF STAAKNWANF PQTQWCKGDE ERCSQTEQLV 180 DLDSLVDPAD AEVNEEVQGF RGRKVPRNSI LETTQFE |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KHN08994.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:12183381}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 5e-50 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_028235660.1 | 1e-162 | axial regulator YABBY 4-like | ||||
Swissprot | Q9LDT3 | 4e-66 | YAB4_ARATH; Axial regulator YABBY 4 | ||||
TrEMBL | A0A445K7A3 | 1e-161 | A0A445K7A3_GLYSO; Axial regulator YABBY 4 isoform A | ||||
STRING | GLYMA06G10110.2 | 1e-151 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6144 | 28 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G23420.1 | 2e-68 | YABBY family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|