PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN08981.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GATA
Protein Properties Length: 262aa    MW: 28873.6 Da    PI: 6.226
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN08981.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.51.4e-16174210135
        GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                 C++Cg ++  Tp++Rrgp+g+++LCnaCGl+++ +g+
  KHN08981.1 174 CTHCGISSksTPMMRRGPSGPRSLCNACGLFWANRGT 210
                 *****99999***********************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062035.8E-16106148IPR010402CCT domain
PROSITE profilePS5101712.521106148IPR010402CCT domain
PROSITE profilePS501149.908168226IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.52E-12168219No hitNo description
SMARTSM004013.7E-15168221IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.6E-15173215IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440174201IPR000679Zinc finger, GATA-type
CDDcd002021.60E-15174219No hitNo description
PfamPF003202.5E-14174210IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MFGSMNKIVS AEDTDGSVSD HHIHYSSHTI EDDGAASDHH IHYSSHTIED DVVAVEDVSI  60
VSDPVQAVLL LLGGNELTSG SQCAELSSQN QTGEEEYPAK CSLPQRAASL NRFRQKRKER  120
CFDKKVRYSV RQEVALRMHR NKGQFTSSKN QDGTNSWGSD QESGQDAVQS ETLCTHCGIS  180
SKSTPMMRRG PSGPRSLCNA CGLFWANRGT LRDLSKRNQE HSLAPPEQVD EGSNNNDFDC  240
RSGIPAQHNN LVNDNKALVS DR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00451DAPTransfer from AT4G24470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN08981.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0968950.0BT096895.1 Soybean clone JCVI-FLGm-21G2 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028235679.11e-180GATA transcription factor 25-like
SwissprotQ9LRH61e-74GAT25_ARATH; GATA transcription factor 25
TrEMBLA0A445K7A91e-179A0A445K7A9_GLYSO; GATA transcription factor 25
STRINGGLYMA06G10280.11e-176(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28363368
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.26e-77GATA-type zinc finger protein with TIFY domain
Publications ? help Back to Top
  1. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]