PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN08964.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 200aa    MW: 22249.5 Da    PI: 7.6038
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN08964.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.52.1e-12250455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                +h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++++k+L+
  KHN08964.1  2 THIAVERNRRKQMNEYLAVLRSLMPSS---YVQRGDQASIIGGAINFVKELE 50
                8**************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.89E-12154No hitNo description
SuperFamilySSF474591.7E-15164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.57149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-13262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-9250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.8E-10455IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.681125200IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MTHIAVERNR RKQMNEYLAV LRSLMPSSYV QRGDQASIIG GAINFVKELE QLLQSMEGQK  60
RTNQGKENVV GLNGTSTTTT TTPFAEFFAF PQYTTRGTTM AQNNQEQKQW AVADIEVTMV  120
DNHANLKVLS KKQPGQIMKI VVGLQSLKLS ILHLNVSTLD DMVLYSVSVK VEDGCLLNTV  180
DEIAAAVNQL LRTIQEVTFS
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN08964.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0979370.0BT097937.1 Soybean clone JCVI-FLGm-22B18 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028235706.11e-145transcription factor bHLH94-like
SwissprotQ9C7T45e-80BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A445K7H01e-144A0A445K7H0_GLYSO; Transcription factor bHLH96 isoform B
STRINGGLYMA06G10470.11e-144(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71834135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.14e-79bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]