PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN08773.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 678aa    MW: 76539.1 Da    PI: 5.5054
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN08773.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM180.73.6e-5681351128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                 lppGfrFhPtdeelv++yLk+k++g+k+el e+i+evd+yk+ePwdLp k  + +++ ewyfFs+rd+ky++g+r+nratksgyWkatgkd++v s ++
  KHN08773.1   8 LPPGFRFHPTDEELVSYYLKRKINGRKIEL-EIIHEVDLYKCEPWDLPgKsLLPGKDLEWYFFSPRDRKYPNGSRTNRATKSGYWKATGKDRKVNS-ES 104
                 79****************************.99***************6434445667*************************************9.99 PP

         NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                 +++g+kktLv+y+grap+g +t Wvmheyrl
  KHN08773.1 105 RAIGMKKTLVYYRGRAPHGCRTGWVMHEYRL 135
                 9****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.76E-654158IPR003441NAC domain
PROSITE profilePS5100560.8638158IPR003441NAC domain
PfamPF023653.6E-309135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    Send to blast
MNMAPVSLPP GFRFHPTDEE LVSYYLKRKI NGRKIELEII HEVDLYKCEP WDLPGKSLLP  60
GKDLEWYFFS PRDRKYPNGS RTNRATKSGY WKATGKDRKV NSESRAIGMK KTLVYYRGRA  120
PHGCRTGWVM HEYRLDETQC ETNSGLQDAY ALCRVCKKTA VIPPKVGDQH YVNVPSHVNQ  180
ITSDQSSSID IELYSEGRGE VLESSNYLMP WDTCPSPNIN IGSALNININ GGTRDNNIGT  240
WSHFLAEDLP NLPTSASSFP NYGSMSYPPS KVDIALECAR MQHRFTMPPL EVQDFPQVGI  300
SELKMAQASG SNMCGGSRNN ETDILQEILS VAHASHELIN QSNYSSHSQA LGANENNYAA  360
PHESDFTFMV GNNYNRVNDM NTMGFVDKAW EDPNARSIEI GDLDDGFKTE RMVENLRWVG  420
MSSKNMEKGF MEEQKIVPIE HISNFQTNRE ENEVQVGSEQ HNNNKELNDT DIDDFSMGFI  480
NGDDHNENFI DEGNINYSNS TNFEVVEETK VSHGMFVSTR QVADTFFHQI APSQTVKVQL  540
NPLMAEDQSI ENAVMVNQGP PFFRKFKAYV MGKLTKSSNT IASALVFLFA LLLMHCVFLK  600
EQVEDLKSDP KCFDGANSMK KIMRQPAENI IWNEQENFWS VGIKCGKGFS VVLKKIGIFL  660
TISLALCTMW ANHVIVDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-57316015170NAC domain-containing protein 19
3swm_B3e-57316015170NAC domain-containing protein 19
3swm_C3e-57316015170NAC domain-containing protein 19
3swm_D3e-57316015170NAC domain-containing protein 19
3swp_A3e-57316015170NAC domain-containing protein 19
3swp_B3e-57316015170NAC domain-containing protein 19
3swp_C3e-57316015170NAC domain-containing protein 19
3swp_D3e-57316015170NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN08773.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028213673.10.0NAC domain-containing protein 86-like
RefseqXP_028213674.10.0NAC domain-containing protein 86-like
TrEMBLA0A0B2PMD10.0A0A0B2PMD1_GLYSO; NAC domain-containing protein 74
STRINGGLYMA18G05020.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44213460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.11e-158NAC domain containing protein 28
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]