PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN08703.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | WRKY | ||||||||
Protein Properties | Length: 480aa MW: 53138.2 Da PI: 6.8636 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.8 | 1.4e-30 | 163 | 222 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK+ kg+++pr+YYrCt + +Cpv+k+v+r+aed +++++tYeg+Hnh+ KHN08703.1 163 MNDGCHWRKYGQKMAKGNPCPRAYYRCTASpSCPVRKQVQRCAEDMSILITTYEGTHNHP 222 58**************************999****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.2E-32 | 149 | 224 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.75E-27 | 156 | 224 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.621 | 158 | 224 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.9E-36 | 163 | 223 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.1E-26 | 164 | 222 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 480 aa Download sequence Send to blast |
MGEAREENKM LEFFEILQQD KPEDATNAKG VFSHDEENEE SELVSLSLGI SISKGKPTKD 60 EKILKNKNGI EKTEDEDVHN KRLVLGLDIN LDPVDQDELT ANNSTTESSF VGERGKEEEP 120 TEMWPPSKVL KTMKSVDKSE VSQHDQPKKT RVSIRARCDT QTMNDGCHWR KYGQKMAKGN 180 PCPRAYYRCT ASPSCPVRKQ VQRCAEDMSI LITTYEGTHN HPLPMSAIAM ACKTSATASM 240 LQSPSLSSQH GLVDSAISSI INSSARYYNP NNALNFSTHQ VSRPQQFYFP NSSISTLNSH 300 PTITLDLTTP PTSSSNSSFT CMPKYSSTNL NFSSGFSPLH SSMPQSPWNS YSGYFNSGTL 360 SQNRHHGGNY MLNTGNQNQP HSLGHLHQPI YMSNNSTISQ HSFPNPIVAA TEAIITSNPK 420 FQSALATALT AYVGNEASGG RLRENHVLEN AELMNLKLLR SENSIGNSSI FPLPLPEQWK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 7e-21 | 150 | 224 | 1 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN08703.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 4e-68 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014619828.1 | 0.0 | probable WRKY transcription factor 61 | ||||
Refseq | XP_028193397.1 | 0.0 | probable WRKY transcription factor 61 | ||||
TrEMBL | A0A0B2PM53 | 0.0 | A0A0B2PM53_GLYSO; Putative WRKY transcription factor 61 | ||||
STRING | GLYMA02G02430.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF650 | 34 | 134 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15130.1 | 7e-53 | WRKY DNA-binding protein 72 |
Publications ? help Back to Top | |||
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