PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN08616.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | TALE | ||||||||
Protein Properties | Length: 324aa MW: 36864.4 Da PI: 5.0607 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 27.4 | 5.8e-09 | 246 | 301 | 3 | 55 |
--SS--HHHHHHHHHHHH...HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFe...knrypsaeereeLAkklgLterqVkvWFqNrRake 55 kR ++ k+ ++L + + k +yp++ ++ LAk++gL+++q+ +WF N+R ++ KHN08616.1 246 KRGKLPKDARQTLLQWWNihyKWPYPTEGDKIALAKSTGLDQKQINNWFINQRKRY 301 555555556666655555443679*****************************986 PP | |||||||
2 | ELK | 26.5 | 1.5e-09 | 221 | 242 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK++Llr ++++ gsLk EFs KHN08616.1 221 ELKDRLLRRFGSHVGSLKLEFS 242 9********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 8.6E-23 | 82 | 126 | IPR005540 | KNOX1 |
Pfam | PF03790 | 2.1E-22 | 84 | 125 | IPR005540 | KNOX1 |
SMART | SM01256 | 8.9E-28 | 133 | 184 | IPR005541 | KNOX2 |
Pfam | PF03791 | 4.6E-26 | 137 | 183 | IPR005541 | KNOX2 |
SMART | SM01188 | 8.9E-5 | 221 | 242 | IPR005539 | ELK domain |
Pfam | PF03789 | 4.6E-6 | 221 | 242 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 9.463 | 221 | 241 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 13.054 | 241 | 304 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 9.84E-20 | 242 | 315 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.9E-13 | 243 | 308 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.0E-28 | 246 | 305 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.94E-12 | 253 | 305 | No hit | No description |
Pfam | PF05920 | 3.3E-17 | 261 | 300 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 279 | 302 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010073 | Biological Process | meristem maintenance | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 324 aa Download sequence Send to blast |
MEDEIYGVSS TAEYTDRALM TPENIFPAEY HSFLMSSAAR TPMFGSDEFL SAAIAVTAGN 60 ETEPYPNVSV APEIQRHHDA SSLIKAKIAS HPHYPRLLQA YIECQKVGAP PELTCLLEEI 120 RRENDVRQRD VVVSTCVGAD PELDEFMETY CDMLVKYKSD LTRPFDEATT FLNKIETQLT 180 DLCSRSSLPT LYDDGGVSSE EGFSAGDGDP QDGQLRSEDR ELKDRLLRRF GSHVGSLKLE 240 FSKKKKRGKL PKDARQTLLQ WWNIHYKWPY PTEGDKIALA KSTGLDQKQI NNWFINQRKR 300 YWKPSENMPF SMVDGLTGRF LTDE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 242 | 249 | KKKKRGKL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN08616.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003552032.1 | 0.0 | homeobox protein knotted-1-like 6 | ||||
Refseq | XP_014625782.1 | 0.0 | homeobox protein knotted-1-like 6 | ||||
Refseq | XP_028213293.1 | 0.0 | homeobox protein knotted-1-like 6 | ||||
Swissprot | Q84JS6 | 1e-142 | KNAT6_ARATH; Homeobox protein knotted-1-like 6 | ||||
TrEMBL | A0A0B2PGW9 | 0.0 | A0A0B2PGW9_GLYSO; Homeobox protein knotted-1-like 6 | ||||
TrEMBL | A0A368UGQ4 | 0.0 | A0A368UGQ4_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA18G20293.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF620 | 34 | 125 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23380.1 | 1e-134 | KNOTTED1-like homeobox gene 6 |
Publications ? help Back to Top | |||
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