PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN08583.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | B3 | ||||||||
Protein Properties | Length: 879aa MW: 96869.3 Da PI: 7.4485 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 58 | 1.7e-18 | 336 | 435 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k+l+ sd+++ grlvlpkk+ae++ ++++e+ l++ d +g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++ + e++lv++ KHN08583.1 336 FQKTLSASDAGRIGRLVLPKKCAETYfpPISQPEGLPLKILDAKGKEWIFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRLE-PEGRLVMG 432 99**************************555566778***************9989999999***9.********************766.67767777 PP EE- CS B3 96 vfr 98 +++ KHN08583.1 433 FRK 435 766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.8E-30 | 333 | 442 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.63E-20 | 333 | 435 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.15E-22 | 334 | 435 | No hit | No description |
PROSITE profile | PS50863 | 11.138 | 336 | 437 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.4E-21 | 336 | 437 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.4E-15 | 336 | 435 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 14.096 | 563 | 613 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 4.8E-12 | 568 | 610 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 879 aa Download sequence Send to blast |
MASASSSSSK LCFNSDCKEL KSERPKKGWR LRSGELAELC DRCGSAFEEG RFCEIFHSNA 60 SGWRSCETCL KRIHCGCIVS SHAFMLLDPG GIECYACARK SIILPSNLPW PQSFSLQNRL 120 SDRLRDLSAK GWSQLAGSGP VPWKQAPSLF NSASSSDLIP EVPSLVELSN SFDKMYCNER 180 LPASALEKKN EDLSGIPVNW NVKLGSREMM LMNGMRNEDK SSSCLNMCQQ PSSLKEESSP 240 QPFGLAVPNS CQNERNGQLG VTGSHPQQTP PPPGKQFNGT MHLAPDSSGE AQIRNGRPRA 300 DSRGRNQLLP RYWPRCTDLE LQQISIDSNS VITPLFQKTL SASDAGRIGR LVLPKKCAET 360 YFPPISQPEG LPLKILDAKG KEWIFQFRFW PNNNSRMYVL EGVTPCIQSM QLQAGDTVTF 420 SRLEPEGRLV MGFRKASSVM PSDQDNETKT GNGFSAHGEV ELADPNSWSK VDKSGYIAKE 480 ALGSKSLISR KRKSNILSSK SKRLRIENED LIELKITWQE AQGLLRPPPS HIPSIVVIEG 540 FEFEEYEEAP VLGKPTIFTS DSVGEKIQWA QCEDCFKWRK LPASALLPSK WTCSDNSWDP 600 ERFSCSAAQE LTAEQLENLL PPCNSAVPKK MKATKQDPDN AEALEGLDTL ANLAILGEGE 660 ALPASAQATT KHPRHRPGCS CIVCIQPPSG KGPKHKQTCT CNVCLTVKRR FRTLMLRREK 720 KQSEKEAETT RKKQQQQHPL PLPSSEILLD EDSLPCSNTG DSSPNQNKEG NDGSDDDPSR 780 IKSSASPFKG KIDLNIQPER EEELSPGSDS GGMMKLLHDA TERYLKQQTV NSGTGDSSGS 840 QSQLVGDAMR EDKLSNGVAH GSSSHNTDKE HAQSLPMNV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 2e-61 | 314 | 438 | 2 | 126 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 488 | 493 | SRKRKS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN08583.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 0.0 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006594624.1 | 0.0 | B3 domain-containing protein Os07g0563300 | ||||
Refseq | XP_028187625.1 | 0.0 | B3 domain-containing protein Os07g0563300-like | ||||
Swissprot | Q0D5G4 | 0.0 | Y7633_ORYSJ; B3 domain-containing protein Os07g0563300 | ||||
TrEMBL | A0A445I9N9 | 0.0 | A0A445I9N9_GLYSO; B3 domain-containing protein isoform A | ||||
TrEMBL | I1M2C3 | 0.0 | I1M2C3_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA13G31970.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7738 | 31 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30470.1 | 1e-157 | high-level expression of sugar-inducible gene 2 |
Publications ? help Back to Top | |||
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