PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN08484.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

NAC

Protein Properties

Length: 320aa MW: 36039.6 Da PI: 8.0872

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN08484.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	106.5	3.3e-33	61	202	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......sgyWka 85 lp+G++F+P+d+e++ e+L++kv+++ ++l+ +++ +i++++P++Lp v+++ + +fF++ +k+y+tg+rk+r+++ + +W++ KHN08484.1 61 LPAGVKFDPNDQEIL-EHLEAKVASDACKLHPlidefipTLEGEnGICYTHPEKLP-GVSKDGQIRHFFHRPSKAYTTGTRKRRKVHtddegiETRWHK 157 799*********9.99****95553333333222333336******.555666777**************755557666778* PP NAM 86 tgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 tgk+++v++++g+++g kk+Lv+y gr++k+ekt Wvmh+y+l KHN08484.1 158 TGKTRAVFASGGAVKGFKKILVLYtnYGRQKKPEKTYWVMHQYHL 202 **********************6658*************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.15E-35	56	221	IPR003441	NAC domain
PROSITE profile	PS51005	32.704	61	221	IPR003441	NAC domain
Pfam	PF02365	2.3E-14	62	202	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MTWCNDSDEN RVIESITPRI TITPNTDDKK LTQEIRTTAC PSCGHNIAFK DKGGIHDLPG 60 LPAGVKFDPN DQEILEHLEA KVASDACKLH PLIDEFIPTL EGENGICYTH PEKLPGVSKD 120 GQIRHFFHRP SKAYTTGTRK RRKVHTDDEG IETRWHKTGK TRAVFASGGA VKGFKKILVL 180 YTNYGRQKKP EKTYWVMHQY HLGNTEEEKD GELVVSKVFY QTQPRQCVNP IIIKDPYEKM 240 LNGGSVQDST NTSITKTTAT LLDCYNPPYI DYDHAHASHN RESSSQLIIP SSVVQVDGSY 300 IRSTMDAKKA RFESNTGKSF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:22133261}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN08484.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT031220	0.0	KT031220.1 Glycine max clone HN_CCL_58 NAC transcription factor (Glyma15g08480.4) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003543021.1	0.0	NAC domain-containing protein 73
Refseq	XP_028188469.1	0.0	NAC domain-containing protein 73-like
Swissprot	O49459	1e-117	NAC73_ARATH; NAC domain-containing protein 73
TrEMBL	A0A445I8V7	0.0	A0A445I8V7_GLYSO; NAC domain-containing protein 73
TrEMBL	I1M1Y6	0.0	I1M1Y6_SOYBN; Uncharacterized protein
STRING	GLYMA13G30800.4	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1228	34	108

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	1e-119	NAC domain containing protein 73

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Jervis J, et al. A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508]