PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN08360.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 355aa    MW: 39232.3 Da    PI: 8.9598
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN08360.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.24.7e-062462841154
                 HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  KHN08360.1 246 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 284
                 5778999**********998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.576235284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.03E-7245288No hitNo description
SuperFamilySSF474599.29E-12245302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0049246290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-9249292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MLQENLSSSN TNFQPQESGS NIGLSQHHHH HHHHQQLHWR PEKLFSAESS SNEFKRGFSL  60
DQTQFSPQYS SGDSNVTSQG LPCSFQMDYV GNPSSILQGL LGQESNNNNN QQQQQPYQGG  120
GGGAMNFAYS AAASYGLNSN VELVRSWSKV PQFLRASPPK QQPNNQLHFT NNAPFWNANS  180
EPAIKDSRSS FIPSLHPPFS TSNFDVQSKN ISEVRDSGGV VKKSGSEAAP KRPRNETPSP  240
LPAFKVRKEK MGDRITALQQ LVSPFGKTDT ASVLSEAIEY IKFLHEQVTV LSTPYMKSGA  300
PIQHQQSSGK SKESEGPKQD LRSRGLCLVP VSSTFPVTHE PTVEYWTPTF GGTYR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN08360.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150391e-85AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028237839.10.0transcription factor bHLH123-like
SwissprotQ8GXT32e-76BH123_ARATH; Transcription factor bHLH123
TrEMBLA0A0B2PGJ20.0A0A0B2PGJ2_GLYSO; Transcription factor bHLH123
TrEMBLA0A445KF030.0A0A445KF03_GLYSO; Transcription factor bHLH123
STRINGGLYMA06G40760.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111833106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.11e-71bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]