PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN08326.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ZF-HD
Protein Properties Length: 273aa    MW: 30386.2 Da    PI: 6.7071
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN08326.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer74.12e-2342881259
  ZF-HD_dimer 12 NhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59
                 NhA+s+ gha+DGC Ef+p  geegt +alkCaAC+CHRn HR+e+++
   KHN08326.1 42 NHAVSIVGHAIDGCIEFLPG-GEEGTLDALKCAACNCHRNLHRKETDT 88
                 *******************9.999********************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5152318.7023685IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047704.1E-214286IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-164288IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015669.1E-214285IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466893.91E-19151222IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.7E-31155222IPR009057Homeodomain-like
TIGRFAMsTIGR015651.4E-26165221IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MELQENHEEA ELGLPTAVAA TSYEEFGMPL NHGEQEPVVE VNHAVSIVGH AIDGCIEFLP  60
GGEEGTLDAL KCAACNCHRN LHRKETDTYS VPFHHHHPPL PPPVPLAAYY RALPGYLHMT  120
GHQCAMLAHP SLSGRGGPQP PWEDLEDSDP TSGATTHDGS GSSSKKRFRT KFTQHQKDKM  180
LVFAEKLGWR MQKNDESIVQ EFCSEIGVQR HVLKVWMHNN KHILASLRRI ISDQNHLLHP  240
SSAMTKIRPP PNNIVAPSLS HLTNRYDYEV GSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A9e-251642221674ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN08326.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2354070.0AC235407.1 Glycine max strain Williams 82 clone GM_WBb0125K21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028246812.11e-145zinc-finger homeodomain protein 2-like
SwissprotQ6YXH57e-55ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBLA0A0B2PG510.0A0A0B2PG51_GLYSO; ZF-HD homeobox protein
STRINGGLYMA08G38471.11e-139(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.11e-52homeobox protein 22
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]