PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN08325.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ZF-HD
Protein Properties Length: 214aa    MW: 23875.2 Da    PI: 9.6237
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN08325.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer88.18.7e-281973459
  ZF-HD_dimer  4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59
                  +Y+eClkNhA+s+G h++DGC Ef+p  g+egt + lkC  C+CHRnFHR+e+++
   KHN08325.1 19 GKYQECLKNHAVSIGKHVIDGCIEFLPG-GKEGTLDVLKCVVCNCHRNFHRKETHD 73
                 58*************************9.999********************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257746.0E-19771IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.0E-262071IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.9E-252070IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152322.922170IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466899.56E-16137212IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.3E-26141213IPR009057Homeodomain-like
TIGRFAMsTIGR015651.3E-20151207IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MAVPVAPPTN IVAQNSGKGK YQECLKNHAV SIGKHVIDGC IEFLPGGKEG TLDVLKCVVC  60
NCHRNFHRKE THDTYSVPFH HHHPPLPPPV PFAAYYHTPP GYPHMTGHQR AMLAHPSLSG  120
GGGAQPPLED LEDSDPTSGA TTHDGSGSSS KKRFRTKFTQ HKKDKMLVFA EKLRWRMQKN  180
DESVVQEFFS ENGVQRHVLK VWMHNNKHTL GKKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-201522091875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN08325.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2354070.0AC235407.1 Glycine max strain Williams 82 clone GM_WBb0125K21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028245221.11e-141zinc-finger homeodomain protein 1-like
SwissprotA2Z2591e-58ZHD1_ORYSI; Zinc-finger homeodomain protein 1
TrEMBLA0A0B2PGG71e-159A0A0B2PGG7_GLYSO; ZF-HD homeobox protein
STRINGGLYMA08G38500.11e-134(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.13e-57homeobox protein 22
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]