PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN08284.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GATA
Protein Properties Length: 350aa    MW: 37925.4 Da    PI: 4.4006
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN08284.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA46.84.1e-15200236135
        GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                 C++Cg+ +  Tp +Rrgp g++tLCnaCGl+++ kg+
  KHN08284.1 200 CHHCGVGEnnTPAMRRGPAGPRTLCNACGLMWANKGT 236
                 ****998888************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009796.0E-76196IPR010399Tify domain
PROSITE profilePS5132012.6376196IPR010399Tify domain
PfamPF062001.3E-96495IPR010399Tify domain
PfamPF062036.9E-15129170IPR010402CCT domain
PROSITE profilePS5101712.719129171IPR010402CCT domain
SMARTSM004011.8E-10194247IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.23E-11194244No hitNo description
Gene3DG3DSA:3.30.50.102.5E-14198241IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.06E-15199243No hitNo description
PROSITE patternPS003440200227IPR000679Zinc finger, GATA-type
PfamPF003204.9E-13200236IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MATVNPQPLQ FEDPAIPVDE DDDDDDDGGD DDAMDELEDA NVNSVNVTNA ASVNYEAVVA  60
KSSRTSELTL SFEGEVYVFP AVTPQKVQAV LLLLGGRDVQ ASVPAVEPPF DQSNRDMGDT  120
PKRSNLSRRI ASLVRFREKR KERCFDKKIR YSVRKEVAQR MHRKNGQFAS LKESPGSSNW  180
DSAQSSGQVG TSHSESVRRC HHCGVGENNT PAMRRGPAGP RTLCNACGLM WANKGTLRDL  240
SKGGRNLSVE QSDLDTPIDV KPTSVLEGEL PGIHDEQGSS EDPSKSNAAD GSSNHAVNPS  300
DEELPETAEH FTNVLPLGIG HSSTNDSEQE PLVELSNPSD TDIDIPGNFD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118123DTPKRS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN08284.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0934500.0BT093450.1 Soybean clone JCVI-FLGm-17E18 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028228415.10.0GATA transcription factor 24-like isoform X1
SwissprotQ8GXL74e-70GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A445KYH10.0A0A445KYH1_GLYSO; GATA transcription factor 24 isoform A
STRINGGLYMA04G10340.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33193364
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.23e-69ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]