PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN08284.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | GATA | ||||||||
Protein Properties | Length: 350aa MW: 37925.4 Da PI: 4.4006 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 46.8 | 4.1e-15 | 200 | 236 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg+ + Tp +Rrgp g++tLCnaCGl+++ kg+ KHN08284.1 200 CHHCGVGEnnTPAMRRGPAGPRTLCNACGLMWANKGT 236 ****998888************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00979 | 6.0E-7 | 61 | 96 | IPR010399 | Tify domain |
PROSITE profile | PS51320 | 12.637 | 61 | 96 | IPR010399 | Tify domain |
Pfam | PF06200 | 1.3E-9 | 64 | 95 | IPR010399 | Tify domain |
Pfam | PF06203 | 6.9E-15 | 129 | 170 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 12.719 | 129 | 171 | IPR010402 | CCT domain |
SMART | SM00401 | 1.8E-10 | 194 | 247 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 3.23E-11 | 194 | 244 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.5E-14 | 198 | 241 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 2.06E-15 | 199 | 243 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 200 | 227 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 4.9E-13 | 200 | 236 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence Send to blast |
MATVNPQPLQ FEDPAIPVDE DDDDDDDGGD DDAMDELEDA NVNSVNVTNA ASVNYEAVVA 60 KSSRTSELTL SFEGEVYVFP AVTPQKVQAV LLLLGGRDVQ ASVPAVEPPF DQSNRDMGDT 120 PKRSNLSRRI ASLVRFREKR KERCFDKKIR YSVRKEVAQR MHRKNGQFAS LKESPGSSNW 180 DSAQSSGQVG TSHSESVRRC HHCGVGENNT PAMRRGPAGP RTLCNACGLM WANKGTLRDL 240 SKGGRNLSVE QSDLDTPIDV KPTSVLEGEL PGIHDEQGSS EDPSKSNAAD GSSNHAVNPS 300 DEELPETAEH FTNVLPLGIG HSSTNDSEQE PLVELSNPSD TDIDIPGNFD |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 118 | 123 | DTPKRS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN08284.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT093450 | 0.0 | BT093450.1 Soybean clone JCVI-FLGm-17E18 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028228415.1 | 0.0 | GATA transcription factor 24-like isoform X1 | ||||
Swissprot | Q8GXL7 | 4e-70 | GAT24_ARATH; GATA transcription factor 24 | ||||
TrEMBL | A0A445KYH1 | 0.0 | A0A445KYH1_GLYSO; GATA transcription factor 24 isoform A | ||||
STRING | GLYMA04G10340.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3319 | 33 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21175.2 | 3e-69 | ZIM-like 1 |
Publications ? help Back to Top | |||
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