PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN08270.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | YABBY | ||||||||
Protein Properties | Length: 215aa MW: 24177.3 Da PI: 6.0808 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 193.8 | 8e-60 | 6 | 163 | 2 | 166 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlksnvekeesastsv 96 ++f+ +eq+Cy+qC+fC+til+vsvP +sl++vvtvrCGhCtsl+svn++kas +lla+ shl+ + + ++ +k+ +++ s+++ +++++++v KHN08270.1 6 HLFDLPEQICYIQCGFCSTILMVSVPCSSLSMVVTVRCGHCTSLFSVNMSKASfipfHLLASLSHLEPKESSPEADANKTLNSHSASMMTYSDCEEEDV 104 7899***********************************************998898999999997766555555555555555444444444443333 PP YABBY 97 sseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPki 166 +++ + v++PPekrqr Psayn+fik ei+r+ka+nPd++h+eafs+aaknWa fP+ KHN08270.1 105 IP----------MSH-HVVNKPPEKRQRTPSAYNCFIKKEIKRLKAENPDMAHKEAFSTAAKNWANFPQT 163 22..........222.3479************************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.9E-61 | 11 | 164 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 5.24E-9 | 109 | 163 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 5.0E-6 | 114 | 164 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MSTLNHLFDL PEQICYIQCG FCSTILMVSV PCSSLSMVVT VRCGHCTSLF SVNMSKASFI 60 PFHLLASLSH LEPKESSPEA DANKTLNSHS ASMMTYSDCE EEDVIPMSHH VVNKPPEKRQ 120 RTPSAYNCFI KKEIKRLKAE NPDMAHKEAF STAAKNWANF PQTQWCRGDE ESCSQTDQLV 180 NSQVDPPDAE VNEEGQGFRG RKVPRNSILE RTQFE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN08270.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:12183381}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 2e-52 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028228388.1 | 1e-162 | axial regulator YABBY 4-like isoform X4 | ||||
Swissprot | Q9LDT3 | 2e-68 | YAB4_ARATH; Axial regulator YABBY 4 | ||||
TrEMBL | A0A445K7A3 | 1e-144 | A0A445K7A3_GLYSO; Axial regulator YABBY 4 isoform A | ||||
STRING | GLYMA04G10125.1 | 1e-139 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6144 | 28 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23420.1 | 9e-71 | YABBY family protein |
Publications ? help Back to Top | |||
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