PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN08224.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 332aa    MW: 37918.8 Da    PI: 4.269
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN08224.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH314.7e-10168213654
                 HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  ++ErrRR+r+N++++ Lr ++Pk    ++      +iL  +++Y+k+L
  KHN08224.1 168 LMAERRRRKRLNDRLSMLRAIVPKI---SKVCTMQTSILGDTIDYMKEL 213
                 589*********************6...56668899**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.919162213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-12165226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-7168213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-7168219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-13169225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00423258299No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0032440Molecular Function2-alkenal reductase [NAD(P)] activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MEFYDQDFLE ELMTLRRETW DTNPRTEENQ FFDGGSFDCF DQNSLPYLPN SSCGQEVPQT  60
YNNDYPFSEI YGSLLDESSP QIMDSFYSTL DTPLNTPPFL GQEDYPILSM MEEEEQGLLG  120
EELKNLELQT TCKMEPTQSS EMPVFNMGTG LERKNRSKKL QGQPSKNLMA ERRRRKRLND  180
RLSMLRAIVP KISKVCTMQT SILGDTIDYM KELLEKINNL QQEVEVDSNM AGIFKDVKPN  240
EILVRNSPKF EVERSVDTRV EICCAGKPGL ILSTVNTLEA LGLEIQQCVI SCFNDFTMQA  300
SCSEESEQRT MLSSEDIKQA LFRSAGYGGR CL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1170177ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN08224.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0969920.0BT096992.1 Soybean clone JCVI-FLGm-21O6 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028228327.10.0transcription factor bHLH93-like
SwissprotQ9LSL14e-78BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A445KXT80.0A0A445KXT8_GLYSO; Transcription factor bHLH93
TrEMBLI1JV180.0I1JV18_SOYBN; Uncharacterized protein
STRINGGLYMA04G09580.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118634103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.13e-80beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  4. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  5. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  6. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]