PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN08182.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 301aa    MW: 34509.3 Da    PI: 7.5451
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN08182.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.62.2e-13143188555
                 HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 h  +Er+RR++i   f  L  l+P +     kK++Ka++L  A+eY+k+Lq
  KHN08182.1 143 HILAERKRRENISRMFIALSALIPDL-----KKMDKASVLSNAIEYVKYLQ 188
                 8899**********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.459138187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.05E-17141204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.26E-12143192No hitNo description
Gene3DG3DSA:4.10.280.104.1E-19143203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.1E-11143188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.5E-15144193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MDESWLKWVS ILDTNDYHLF SEYDMNSVEE QLEGENSVDP GELSWENHSY SYLTKESTTL  60
LSNSSSLEEI NTGFDMTSLK QDASPQKPKS CILSFEDSTL VPINPKKTCQ IYDHGEHSKE  120
TQEKPHNRKP LKRGRSFSQT LDHILAERKR RENISRMFIA LSALIPDLKK MDKASVLSNA  180
IEYVKYLQQH VKDLEQENKK RKTESLGCFK INKTCDDKPI KKCPKVEARV SGKDVLIRVT  240
CEKQKDIVLK LLAKLEAHNL CIVCSNVLPF GNSALSITSI AMVGAHHYYN DVFRRDQFHV  300
P
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146151ERKRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN08182.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028224979.10.0transcription factor bHLH18-like
SwissprotQ9T0728e-37BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A0B2PKR70.0A0A0B2PKR7_GLYSO; Transcription factor bHLH25
STRINGGLYMA03G25280.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1634849
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.15e-39bHLH family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]