PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN08159.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GATA
Protein Properties Length: 274aa    MW: 30583.5 Da    PI: 6.3541
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN08159.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.41.7e-17201235135
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                 Cs+C +  Tp+WR gp g+ktLCnaCG++y++ +l
  KHN08159.1 201 CSHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRL 235
                 *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.358195231IPR000679Zinc finger, GATA-type
SMARTSM004011.2E-13195249IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.09E-14198259No hitNo description
Gene3DG3DSA:3.30.50.101.7E-13199233IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.82E-12200247No hitNo description
PfamPF003203.2E-15201235IPR000679Zinc finger, GATA-type
PROSITE patternPS003440201226IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MNMDMCQNVS VSGECQQVQV FAPSCSSSLD DLFSAQNTEV DVELEWLSEF VEDCFSSPPS  60
CVLVPIGVKT TSTSTNLSSG TLKRPQQQNE SPLQNFAVPG KARSKRKRLS APRANKDPLN  120
IWSHHLNPQN ESLCSDPPLL KQAYWLADSE LIMPKPKDEE QEEVVTKEDE KVINVMSKES  180
FGDSELEEGS NGQQPMPTRR CSHCLAQRTP QWRAGPLGPK TLCNACGVRY KSGRLLPEYR  240
PAKSPTFVSY LHSNSHKKVM EMRMAVFSTI SSEQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN08159.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0935010.0BT093501.1 Soybean clone JCVI-FLGm-14K19 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028216286.10.0GATA transcription factor 5-like
TrEMBLA0A0B2PKB40.0A0A0B2PKB4_GLYSO; GATA transcription factor 9
STRINGGLYMA19G28650.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84872444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.18e-41GATA transcription factor 9
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]