PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN07994.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ZF-HD
Protein Properties Length: 214aa    MW: 23732.9 Da    PI: 8.6077
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN07994.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer85.65.4e-271973459
  ZF-HD_dimer  4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59
                  +Y+eClkNh +s+G h +DGC Ef+p  geegt +alkC  C CHRnFHR+e+++
   KHN07994.1 19 GKYQECLKNHSVSIGKHIIDGCIEFLPG-GEEGTLEALKCVVCSCHRNFHRKETHD 73
                 58*************************9.999********************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257744.0E-18771IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047702.1E-262071IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.1E-242070IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152322.8492170IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466892.31E-20137212IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-32141213IPR009057Homeodomain-like
TIGRFAMsTIGR015655.9E-27151207IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MAVPVAPPTN IVAQNSGKGK YQECLKNHSV SIGKHIIDGC IEFLPGGEEG TLEALKCVVC  60
SCHRNFHRKE THDTYSVPFH HHHPPLPPPV PFAAYYHTPP GYPHMTGHQR AMLAHPSLSG  120
GGGPQPPLED LEDSDPTSGA TTHDGSGSSS KKRFRTKFTQ HQKDKMLVFA EKLGWRMQKN  180
DDSVVQEFCS EIGVQRHVLK VWMHNNKHTL GKKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-251522091875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein. Putative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN07994.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2354070.0AC235407.1 Glycine max strain Williams 82 clone GM_WBb0125K21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028242397.11e-159zinc-finger homeodomain protein 2-like
SwissprotQ9SB613e-63ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBLA0A0B2PJT81e-159A0A0B2PJT8_GLYSO; ZF-HD homeobox protein
STRINGGLYMA08G38500.11e-157(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.13e-61homeobox protein 22
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  2. Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA
    Seed tolerance to deterioration in arabidopsis is affected by virus infection.
    Plant Physiol. Biochem., 2017. 116: p. 1-8
    [PMID:28477474]