PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN07851.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | LBD | ||||||||
Protein Properties | Length: 219aa MW: 23536.9 Da PI: 8.0609 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 84.8 | 1.3e-26 | 4 | 108 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C++C++lr++C +dC+++p++ p++q++++ +++k++G++ +++l++++p+++ +++++sl+yeA+ r+ +P G+vg+++++++ +q+ ++ KHN07851.1 4 SCNGCRILRKGCGEDCAIRPCLewintPQAQANATLFLAKFYGRAGLVNLIDSAPQHNGPAVFKSLLYEACGRIANPTFGSVGLFWTGEWAQCQALFDA 102 6*********************************************************************************************99888 PP DUF260 95 allkee 100 +l++++ KHN07851.1 103 VLAGSQ 108 888776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 15.283 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 8.4E-22 | 4 | 98 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MKLSCNGCRI LRKGCGEDCA IRPCLEWINT PQAQANATLF LAKFYGRAGL VNLIDSAPQH 60 NGPAVFKSLL YEACGRIANP TFGSVGLFWT GEWAQCQALF DAVLAGSQIK VVGASDSQGI 120 ATHGDEHVAQ ILGIRHVSKD AEMDHVKGRA KKIKRSRTVI KPKPQVSSID SAAMLKLTWS 180 REPGGSEGDS EETVEAMLVS QNKPSRNGGV EMDLDLTLG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN07851.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028247178.1 | 1e-161 | LOB domain-containing protein 41-like | ||||
TrEMBL | A0A0B2PEM5 | 1e-162 | A0A0B2PEM5_GLYSO; LOB domain-containing protein 41 | ||||
STRING | GLYMA08G31143.1 | 1e-160 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14785 | 6 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 1e-63 | LOB domain-containing protein 41 |
Publications ? help Back to Top | |||
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