PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KHN07827.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 752aa MW: 83073.2 Da PI: 6.4045 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 68.3 | 1e-21 | 594 | 691 | 2 | 96 |
EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 +kvl++sdv+++gr+vlpkk ae+h +++ + ++ +t+ed ++r+W+++++y ++ks++y+l+ ++ +Fv+angL+egDf+v++ ++ +++++++ KHN07827.1 594 QKVLKQSDVGSLGRIVLPKKEAETHlpELEARDGISITMEDiGTSRVWNMRYRYwpNNKSRMYLLE-NTGDFVRANGLQEGDFIVIY--SDvKCGKYMI 689 79*************************999999********7778*********777777777777.********************..5669998887 PP EE CS B3 95 kv 96 + KHN07827.1 690 RG 691 65 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.6E-29 | 588 | 701 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10015 | 1.66E-36 | 591 | 692 | No hit | No description |
SuperFamily | SSF101936 | 9.42E-24 | 592 | 688 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.138 | 593 | 695 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.1E-22 | 593 | 695 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.5E-18 | 594 | 690 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 752 aa Download sequence Send to blast |
MECEVELQGG DLHAGEVTDP NPIGFGNMED EHTLAVAERE MWLNSDQDEF LGVNDASMFY 60 ADFPPLPDFP CMSSSSSSSS ALPFPVKTMT CSTRTTTTTT TSSSSSSSSW AVLKSDAEED 120 AEKNHCNRYM HDQLDATLSS TASMEVSQQK NLDPGLGGPV GECMDDVMDT FGYMELLEAN 180 DFFDPASIFQ NEDNENPLVD FGTLEQHVPL HDEQHEMLHH QQGRTEEVDH QVPVCEEIQG 240 DEEGGDGVGV DDEMSNVFLE WLKSNKDSVS ANDLRNVKLK KATIESAARR LGGGKEAMKQ 300 LLKLILEWVQ TSHLQNKRRK ENNGSSISSA LQAQFPDPSV QNNQNTQSGS FSPESNACFN 360 NQTPWLSPQT FATDQAPLMV PPQQFQQPMV GYVGDPYTSG AASNNITTSH NHNSNNPYQP 420 GAEQYHMLES AHSWPHSQFN VACHYSQSFG DNNGIFPHGG FGGGYGNNQY PYQFFHGPGD 480 TLMRLGPSAT KEARKKRMAR QRRFLSHHRH HNGNHQNSGS DPHARLGGGD NCTTGLAAPH 540 HANPTANWMY WQAMTGGAAG PLGGRCGGSF GSPGRAASCG PGWKPEKNLR FLLQKVLKQS 600 DVGSLGRIVL PKKEAETHLP ELEARDGISI TMEDIGTSRV WNMRYRYWPN NKSRMYLLEN 660 TGDFVRANGL QEGDFIVIYS DVKCGKYMIR GVKVRQQGVK PETKKVGKSQ KNQHGTGTNA 720 STSGKMHQLQ LVLLLIMARH RHRKPKLKKV VN |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9b_A | 4e-39 | 589 | 697 | 1 | 109 | B3 domain-containing transcription factor FUS3 |
6j9b_D | 4e-39 | 589 | 697 | 1 | 109 | B3 domain-containing transcription factor FUS3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Participates in abscisic acid-regulated gene expression during seed development. Regulates the transcription of SGR1 and SGR2 that are involved in leaf and embryo degreening. {ECO:0000269|PubMed:19531597, ECO:0000269|PubMed:24043799}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KHN07827.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Repressed by silencing mediated by polycomb group (PcG) protein complex containing EMF1 and EMF2. {ECO:0000269|PubMed:19783648}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB164427 | 0.0 | AB164427.1 Psophocarpus tetragonolobus wbABI3 mRNA for ABI-3 homolog, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_028212569.1 | 0.0 | B3 domain-containing transcription factor ABI3-like isoform X2 | ||||
Swissprot | Q01593 | 1e-155 | ABI3_ARATH; B3 domain-containing transcription factor ABI3 | ||||
TrEMBL | A0A0B2PJT5 | 0.0 | A0A0B2PJT5_GLYSO; B3 domain-containing transcription factor ABI3 | ||||
STRING | GLYMA18G38490.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9448 | 30 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G24650.1 | 1e-86 | B3 family protein |