PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN07785.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | C2H2 | ||||||||
Protein Properties | Length: 474aa MW: 51976 Da PI: 8.881 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.6 | 9.5e-05 | 64 | 84 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ Cgk F r nL+ H r H KHN07785.1 64 CETCGKGFQRDQNLQLHRRGH 84 *******************88 PP | |||||||
2 | zf-C2H2 | 13.5 | 0.00022 | 138 | 160 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ KHN07785.1 138 WKCEKCSKRYAVQSDWKAHSKTC 160 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.01E-6 | 61 | 84 | No hit | No description |
PROSITE profile | PS50157 | 11.593 | 62 | 84 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 8.4E-5 | 62 | 84 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 64 | 84 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.5E-4 | 126 | 159 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.01E-6 | 133 | 158 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 474 aa Download sequence Send to blast |
MDEGEIITHT AFPQNLTASA ASNDHNKPPS ALRRKRNLPG NPDPEAEVIA LSPKTLMATN 60 RFLCETCGKG FQRDQNLQLH RRGHNLPWKL KQRTGKEARK RVYVCPEKSC VHHDPSRALG 120 DLTGIKKHFC RKHGEKKWKC EKCSKRYAVQ SDWKAHSKTC GTREYKCDCG TIFSRRDSFI 180 THRAFCDALA EETARVNAAS DINTSLGGNN IGYNIMGTSL GPNMATHFPS IFKPVSSTDE 240 TSNQTSRGLP LWMSQITSSQ AQERIMVNTN LREIHQLGSA TSSSSGTIYD GNSILQCPNL 300 PPSNNYQLSW VFGTKISNNS NNQELTTSTT TSLPLGNTSA IPSWYSSQHQ PQHQQACPSA 360 NMSATALLQK AAQIGATSSD PSWLGSLGLK CGNNSQGQDG NNNKYSGMYG SSLVLTTTLG 420 SEADNSGCEL SQMHPHKRRH VLNEESGGGQ TRDFLGVGVQ NHFPHFINQG VDLI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 3e-36 | 134 | 203 | 3 | 72 | Zinc finger protein JACKDAW |
5b3h_F | 3e-36 | 134 | 203 | 3 | 72 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the DNA sequence 5'-CTTTTGTCC-3' (PubMed:21265895, PubMed:25929516). Regulates photoperiodic flowering by modulating sugar transport and metabolism (PubMed:21265895, PubMed:25929516). Regulates SUS1 and SUS4 (PubMed:21265895). Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:25829440). {ECO:0000269|PubMed:21265895, ECO:0000269|PubMed:25829440, ECO:0000269|PubMed:25929516}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN07785.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by 'SHORT-ROOT' (SHR)(PubMed:16640459). Strongly down-regulated by sugar deprivation, but not regulated by day-length. {ECO:0000269|PubMed:16640459}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235296 | 0.0 | AC235296.1 Glycine max strain Williams 82 clone GM_WBb0059O10, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028238076.1 | 0.0 | zinc finger protein NUTCRACKER-like | ||||
Swissprot | Q9FFH3 | 1e-136 | IDD8_ARATH; Zinc finger protein NUTCRACKER | ||||
TrEMBL | A0A0B2PET1 | 0.0 | A0A0B2PET1_GLYSO; Zinc finger protein NUTCRACKER | ||||
STRING | GLYMA06G44080.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4626 | 29 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44160.1 | 1e-132 | C2H2-like zinc finger protein |
Publications ? help Back to Top | |||
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