PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN07763.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TCP
Protein Properties Length: 333aa    MW: 37367.6 Da    PI: 6.5072
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN07763.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP114.31.6e-35201442110
         TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............ssssasec.....eaesssssa 82 
                 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak++i++l+++             ++++a ++     e  ++++++
  KHN07763.1  20 TGRKDRHSKVYTSKGPRDRRVRLSAHTAIEFYDVQDRLGYDRPSKAVDWLIKKAKTSIDKLAELppwhpptnheeeeQNDAAGSSgviaiE--QQQQQQ 116
                 79**************************************************************887776666655533333222333221..222222 PP

         TCP  83 snsssgkaaksaakskksqksaasalnl 110
                 ++++++++++++++++++q+s+++  n+
  KHN07763.1 117 QQQQQQQQQQQQQQQHQQQQSESCGYNF 144
                 2222223333333455555555555554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.0E-3420137IPR005333Transcription factor, TCP
PROSITE profilePS5136931.982280IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MRTNVGDIVQ VEGGHIVRST GRKDRHSKVY TSKGPRDRRV RLSAHTAIEF YDVQDRLGYD  60
RPSKAVDWLI KKAKTSIDKL AELPPWHPPT NHEEEEQNDA AGSSGVIAIE QQQQQQQQQQ  120
QQQQQQQQQQ QHQQQQSESC GYNFQLQRQL GAFISTHVDT DHINFQTNNN NSSEDLGLSL  180
HCFQDHPGLI QWQSQQEGAN QTPPSNEHQI QQTPFAGSTP VGFENHYQRS VTWNNEATTT  240
DHVNRLGFLF NSQPYASAYA QSGGTLQSSF SFPMTSSSEL HRPQPVNQPS SIFGSRFVSD  300
GLAGFCIPDR IQGVEENHGV ASNRPSSSPS SIH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-212780154Putative transcription factor PCF6
5zkt_B2e-212780154Putative transcription factor PCF6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN07763.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006582290.10.0transcription factor TCP4
RefseqXP_006582291.10.0transcription factor TCP4
RefseqXP_028238046.10.0transcription factor TCP4-like
TrEMBLA0A0B2PJL60.0A0A0B2PJL6_GLYSO; Transcription factor TCP3
TrEMBLK7KXX90.0K7KXX9_SOYBN; Uncharacterized protein
STRINGGLYMA06G43721.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116334105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.36e-48TCP family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]