PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KHN07694.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 198aa MW: 23063.8 Da PI: 7.5079 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.4 | 6.8e-10 | 35 | 88 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCC.C....TTS-.STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.as.kapskK.lsKaeiLekAveYIksLq 55 + e+ErrRR+++ +++ Lr+l+P + ++ ++Ka+i+e A+ YI q KHN07694.1 35 NLEVERRRREKLSTRILLLRSLVPIiTMqQPLELHlMNKATIVEDAITYIETQQ 88 6699*********************887544444579*************8766 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.195 | 30 | 87 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.2E-10 | 32 | 109 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.86E-8 | 32 | 92 | No hit | No description |
SuperFamily | SSF47459 | 1.31E-12 | 32 | 104 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.4E-7 | 34 | 87 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.0E-7 | 36 | 93 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 198 aa Download sequence Send to blast |
MSLDEFSFNA ENGSNRERMR RKNYDYDTQV FKSKNLEVER RRREKLSTRI LLLRSLVPII 60 TMQQPLELHL MNKATIVEDA ITYIETQQNI VQSLSYELHE MEATSEEIKP KKEEIDAAEE 120 MNKLGIVQAT KIDGNKLWVK MIIEKKRGRF KKLMEAMDNI GIELIDTNVT TLKKSYMVTT 180 FMQVTLGKIG ICIIIEGE |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 38 | 43 | ERRRRE |
2 | 39 | 44 | RRRREK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. Involved in the control of tapetum development. Required for male fertility and pollen differentiation, especially during callose deposition. {ECO:0000269|PubMed:16831835}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KHN07694.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC185959 | 2e-46 | AC185959.13 Glycine max cultivar Williams 82 clone gmw1-58k3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027348379.1 | 1e-75 | transcription factor DYT1-like | ||||
Swissprot | O81900 | 2e-35 | DYT1_ARATH; Transcription factor DYT1 | ||||
TrEMBL | A0A0B2PJ10 | 1e-142 | A0A0B2PJ10_GLYSO; Transcription factor DYSFUNCTIONAL TAPETUM 1 | ||||
STRING | XP_007148286.1 | 1e-69 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5510 | 29 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G21330.1 | 4e-38 | bHLH family protein |