PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN07528.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARR-B
Protein Properties Length: 301aa    MW: 34901.4 Da    PI: 7.7548
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN07528.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like74.81.2e-23169221255
     G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  r++W++eLH++Fv+av q+ G +kA Pk+ile+++++gLt e+v+SHLQk+Rl
  KHN07528.1 169 HRVVWSEELHQEFVNAVMQI-GLDKAEPKRILEVINIPGLTKENVASHLQKHRL 221
                 69******************.********************************8 PP
2Response_reg50.41.2e-172310625107
                   EEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHH CS
  Response_reg  25 evaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeel 107
                    v +++d++ al++++e++  +D+il+ + mp+mdG+++l +  +e  ++p+i+++  ++ + + +a+  Ga+d+  Kp ++++ 
    KHN07528.1  23 AVITFSDAPLALNYVRENKgcVDVILIEVHMPNMDGFQFLHRVGKEI-NVPVIMMSHDDATSALMKAVTHGASDYWIKPLHQNQF 106
                   57799**************************************6666.7********99********************998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004483.8E-91112IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011024.2821114IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521721.99E-1919121IPR011006CheY-like superfamily
PfamPF000726.2E-1421106IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23001.3E-2024125No hitNo description
CDDcd001561.25E-1524107No hitNo description
SuperFamilySSF466891.4E-15167225IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-24167225IPR009057Homeodomain-like
TIGRFAMsTIGR015572.6E-21169221IPR006447Myb domain, plants
PfamPF002498.2E-7170220IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MLLFLIESFV FYFFLLIILF YDAVITFSDA PLALNYVREN KGCVDVILIE VHMPNMDGFQ  60
FLHRVGKEIN VPVIMMSHDD ATSALMKAVT HGASDYWIKP LHQNQFRILR KLVARKLRIE  120
NNPPRKDNSD FASFIVDATM SVPKKRSSNS KEFDFYESDD CYAPPAKEHR VVWSEELHQE  180
FVNAVMQIGL DKAEPKRILE VINIPGLTKE NVASHLQKHR LYLKRSSGMT LQQNGMPFPN  240
TISGITESNI VFRLFKMRFS GMTLHVYRRV VCYSDSTLDI DDLVLNSFHQ FHLFSNEIFR  300
I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A4e-16170224357Transcription factor LUX
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN07528.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014627194.10.0two-component response regulator ARR14
RefseqXP_028217988.10.0two-component response regulator ARR14-like
TrEMBLA0A0B2PIU30.0A0A0B2PIU3_GLYSO; Two-component response regulator ARR2
STRINGGLYMA19G06526.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14524517
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.15e-52response regulator 2
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]