PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN07414.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family SBP
Protein Properties Length: 359aa    MW: 38509.7 Da    PI: 9.122
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN07414.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP139.31.1e-4369145177
                 --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
         SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                 +CqvegCe+dls+ak+y++rhkvC +hsk+p+v+v+gl+qrfCqqCsrfh+l efD++krsCrrrLa+hnerrrk+ 
  KHN07414.1  69 RCQVEGCEVDLSNAKTYYSRHKVCGMHSKSPTVIVAGLQQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKPP 145
                 6**************************************************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.0E-3563131IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.46267144IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.31E-4168149IPR004333Transcription factor, SBP-box
PfamPF031102.9E-3370143IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048653Biological Processanther development
GO:2000025Biological Processregulation of leaf formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MASDAKLSSS ESLNGLKFGQ KIYFEDVGFA TPATSLTSSA TTATTVTSSS SSSSRKGRGG  60
SVQPAQPPRC QVEGCEVDLS NAKTYYSRHK VCGMHSKSPT VIVAGLQQRF CQQCSRFHQL  120
PEFDQGKRSC RRRLAGHNER RRKPPPSSLL TSRYARLSSS AFDHSGRGGN FLMELASYPK  180
LSLRNSLPTP RSSELAPGNQ TSTLSWHGNS ETSSDLFLQG SVGGTSFAGP GHPPGESYTG  240
VTTSSCALSL LSNQTWGSRN PAPSLGLNNM VNFHGTPMTQ PAASSHGASI HQLPNTPWCF  300
KGIDSGNCSP EGVPDLGLGQ ISQPLSSQLH GELDLSQQGR RHYMDLEQSR AYESAHWSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A6e-32701431184squamosa promoter binding protein-like 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00307DAPTransfer from AT2G42200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN07414.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003520534.10.0squamosa promoter-binding-like protein 9 isoform X2
RefseqXP_028225373.10.0squamosa promoter-binding-like protein 9 isoform X2
TrEMBLA0A445LBR90.0A0A445LBR9_GLYSO; Squamosa promoter-binding-like protein 9 isoform B
STRINGGLYMA03G29901.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42083359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.13e-68squamosa promoter binding protein-like 9
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]