PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN07388.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 284aa    MW: 32081.8 Da    PI: 5.6734
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN07388.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.68.7e-202978255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 y+GVr++  +g+WvAeIr+p++   r+r +lg+f taeeAa a+++a+++l+g
  KHN07388.1 29 EYRGVRQRT-WGKWVAEIREPKK---RTRLWLGSFATAEEAAMAYDEAARRLYG 78
                69****999.**********965...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.16E-322888No hitNo description
PfamPF008472.5E-132978IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-212987IPR016177DNA-binding domain
PROSITE profilePS5103222.7482986IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-302987IPR001471AP2/ERF domain
SMARTSM003806.7E-382992IPR001471AP2/ERF domain
PRINTSPR003672.2E-103041IPR001471AP2/ERF domain
PRINTSPR003672.2E-105268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MDTCKKFPLK PWKKGPTRGK GGPQNASCEY RGVRQRTWGK WVAEIREPKK RTRLWLGSFA  60
TAEEAAMAYD EAARRLYGPD AYLNLPHLQP RSTSTTITSS GKFKWFPSKN FISMFPSCGL  120
LNVNAQPSVH LIHQRLQELK RNSVVSQSPP NSSNEPKEET QTVGSKKDGE NPPKDDQMLS  180
EEVLGDLQEK PQIDLHEFLQ QMGILKEERE SERTDSSGSS STMPEALLRD DNDHHLGVFS  240
DNSVNWEALI DMHGIAGIQE SEVTQLEAYD PNDDLTFSTS IWNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-183086360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00411DAPTransfer from AT3G57600Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN07388.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2350460.0AC235046.1 Glycine max strain Williams 82 clone GM_WBb0017A04, complete sequence.
GenBankAC2354520.0AC235452.1 Glycine max strain Williams 82 clone GM_WBb0166E13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003520524.10.0dehydration-responsive element-binding protein 2F
RefseqXP_028225324.10.0dehydration-responsive element-binding protein 2F-like
SwissprotQ9SVX54e-88DRE2F_ARATH; Dehydration-responsive element-binding protein 2F
TrEMBLA0A445LBX50.0A0A445LBX5_GLYSO; Dehydration-responsive element-binding protein 2F
TrEMBLI1JNE90.0I1JNE9_SOYBN; Uncharacterized protein
STRINGGLYMA03G29530.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54773150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.13e-72ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]