PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN07388.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 284aa MW: 32081.8 Da PI: 5.6734 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.6 | 8.7e-20 | 29 | 78 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr++ +g+WvAeIr+p++ r+r +lg+f taeeAa a+++a+++l+g KHN07388.1 29 EYRGVRQRT-WGKWVAEIREPKK---RTRLWLGSFATAEEAAMAYDEAARRLYG 78 69****999.**********965...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.16E-32 | 28 | 88 | No hit | No description |
Pfam | PF00847 | 2.5E-13 | 29 | 78 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.29E-21 | 29 | 87 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.748 | 29 | 86 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-30 | 29 | 87 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.7E-38 | 29 | 92 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-10 | 30 | 41 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-10 | 52 | 68 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MDTCKKFPLK PWKKGPTRGK GGPQNASCEY RGVRQRTWGK WVAEIREPKK RTRLWLGSFA 60 TAEEAAMAYD EAARRLYGPD AYLNLPHLQP RSTSTTITSS GKFKWFPSKN FISMFPSCGL 120 LNVNAQPSVH LIHQRLQELK RNSVVSQSPP NSSNEPKEET QTVGSKKDGE NPPKDDQMLS 180 EEVLGDLQEK PQIDLHEFLQ QMGILKEERE SERTDSSGSS STMPEALLRD DNDHHLGVFS 240 DNSVNWEALI DMHGIAGIQE SEVTQLEAYD PNDDLTFSTS IWNF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 5e-18 | 30 | 86 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00411 | DAP | Transfer from AT3G57600 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN07388.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235046 | 0.0 | AC235046.1 Glycine max strain Williams 82 clone GM_WBb0017A04, complete sequence. | |||
GenBank | AC235452 | 0.0 | AC235452.1 Glycine max strain Williams 82 clone GM_WBb0166E13, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003520524.1 | 0.0 | dehydration-responsive element-binding protein 2F | ||||
Refseq | XP_028225324.1 | 0.0 | dehydration-responsive element-binding protein 2F-like | ||||
Swissprot | Q9SVX5 | 4e-88 | DRE2F_ARATH; Dehydration-responsive element-binding protein 2F | ||||
TrEMBL | A0A445LBX5 | 0.0 | A0A445LBX5_GLYSO; Dehydration-responsive element-binding protein 2F | ||||
TrEMBL | I1JNE9 | 0.0 | I1JNE9_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA03G29530.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5477 | 31 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57600.1 | 3e-72 | ERF family protein |
Publications ? help Back to Top | |||
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