PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN07370.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

FAR1

Protein Properties

Length: 298aa MW: 33282.7 Da PI: 5.8893

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN07370.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	32.4	3e-10	61	134	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +Y +YA+++GF + +++skk ++g+++ +vCs+ +++ + C a+++++++kdg+++++ l H+Hel KHN07370.1 61 YYTKYAHQMGFGIMTRTSKKG-HDGKVKYLILVCSEITRSDA-------------LRKQYCAARINLTLRKDGTYRINAATLGHSHEL 134 79**********9998887.8999****97655544.............45569*************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.2E-6	61	134	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MGELYHSHAP LDINSSGSEE NLISHSPEEI KLEPISFDEN DACPVPRPGM VFSSEAEARF 60 YYTKYAHQMG FGIMTRTSKK GHDGKVKYLI LVCSEITRSD ALRKQYCAAR INLTLRKDGT 120 YRINAATLGH SHELGSHHLL SSDIEMRGKR TLDQEVIDMD CNVSVASDDG SVCCYNVIED 180 VIIEDKPKES VVEHFEPHGQ RLELLCNQFN SIAAVAAEFE DTSSFVKDNL CNLKEKLETW 240 TTLLRKSSQV DVEKSVIVAA IVNIVAAIWH SRNKAGFDNK LVQHSRAIDM VIANVNLA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN07370.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006576823.1	1e-110	protein FAR1-RELATED SEQUENCE 6 isoform X2
Refseq	XP_025983649.1	1e-110	protein FAR1-RELATED SEQUENCE 6 isoform X1
Refseq	XP_028225300.1	1e-110	protein FAR1-RELATED SEQUENCE 6-like
Refseq	XP_028225301.1	1e-110	protein FAR1-RELATED SEQUENCE 6-like
TrEMBL	A0A445LBS5	1e-108	A0A445LBS5_GLYSO; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	K7KEW0	1e-108	K7KEW0_SOYBN; Uncharacterized protein
STRING	GLYMA03G29310.2	1e-109	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF16420	5	7

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933]