PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN07366.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family AP2
Protein Properties Length: 420aa    MW: 46712.1 Da    PI: 8.7219
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN07366.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.82.7e-1361117155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s y+GV++++++gr++A+++d  ++n+ ++k+   g ++ +e Aa+a++ a++k++g
  KHN07366.1  61 SIYRGVTRHRWTGRYEAHLWDkSTWNQnQNKKGKQGAYDDEEAAARAYDLAALKYWG 117
                 57*******************6666777775555599******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.15E-1561126IPR016177DNA-binding domain
PfamPF008475.9E-961117IPR001471AP2/ERF domain
SMARTSM003802.6E-1962131IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.0E-1262126IPR001471AP2/ERF domain
PROSITE profilePS5103218.51862125IPR001471AP2/ERF domain
PRINTSPR003674.1E-56374IPR001471AP2/ERF domain
PRINTSPR003674.1E-5107127IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MASSSSDPGK SAETSEAAAL AVANDQLLLY RGLKKAKKER GCTAKERISK MPPCAAGKRS  60
SIYRGVTRHR WTGRYEAHLW DKSTWNQNQN KKGKQGAYDD EEAAARAYDL AALKYWGPGT  120
LINFPVTDYA RDLEEMQNVS REEYLASLRR KSSGFSRGLA KYRGLSSRWD PTYGRMSGSD  180
YFNSMHYGAG DDSAAESEYV SGFCLDRKID LTSHIKWWGS NESRHSDAGT RLSEEKKLGS  240
AGDVCSELKQ LEQKVQPMEP YQMPQLGRLH NEKKHRSSSL SALSILSQSA AYKSLQEKAS  300
KRQENSTDND ENENKNTINK LDHGKAVEKP SNHDGGNDRL NIAMGMSGTM SLQRNAYPLT  360
PFLSAPLLTA YNTVDPLVDP VLWTSLVPML PAGLSRTAEV TKTETSLETS STYTMFQPEE
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN07366.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0310740.0KT031074.1 Glycine max clone HN_CCL_189 AP2-EREBP transcription factor (Glyma03g29240.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006576818.10.0AP2-like ethylene-responsive transcription factor At2g41710 isoform X1
RefseqXP_028225288.10.0AP2-like ethylene-responsive transcription factor At2g41710 isoform X2
SwissprotQ8GWK21e-165AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A445LCH30.0A0A445LCH3_GLYSO; AP2-like ethylene-responsive transcription factor isoform A
TrEMBLI1JNC30.0I1JNC3_SOYBN; AP2-EREBP transcription factor
STRINGGLYMA03G29240.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60072936
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.11e-153AP2 family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]