PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN07366.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | AP2 | ||||||||
Protein Properties | Length: 420aa MW: 46712.1 Da PI: 8.7219 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 41.8 | 2.7e-13 | 61 | 117 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n+ ++k+ g ++ +e Aa+a++ a++k++g KHN07366.1 61 SIYRGVTRHRWTGRYEAHLWDkSTWNQnQNKKGKQGAYDDEEAAARAYDLAALKYWG 117 57*******************6666777775555599******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 9.15E-15 | 61 | 126 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 5.9E-9 | 61 | 117 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.6E-19 | 62 | 131 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.0E-12 | 62 | 126 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.518 | 62 | 125 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.1E-5 | 63 | 74 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.1E-5 | 107 | 127 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 420 aa Download sequence Send to blast |
MASSSSDPGK SAETSEAAAL AVANDQLLLY RGLKKAKKER GCTAKERISK MPPCAAGKRS 60 SIYRGVTRHR WTGRYEAHLW DKSTWNQNQN KKGKQGAYDD EEAAARAYDL AALKYWGPGT 120 LINFPVTDYA RDLEEMQNVS REEYLASLRR KSSGFSRGLA KYRGLSSRWD PTYGRMSGSD 180 YFNSMHYGAG DDSAAESEYV SGFCLDRKID LTSHIKWWGS NESRHSDAGT RLSEEKKLGS 240 AGDVCSELKQ LEQKVQPMEP YQMPQLGRLH NEKKHRSSSL SALSILSQSA AYKSLQEKAS 300 KRQENSTDND ENENKNTINK LDHGKAVEKP SNHDGGNDRL NIAMGMSGTM SLQRNAYPLT 360 PFLSAPLLTA YNTVDPLVDP VLWTSLVPML PAGLSRTAEV TKTETSLETS STYTMFQPEE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN07366.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031074 | 0.0 | KT031074.1 Glycine max clone HN_CCL_189 AP2-EREBP transcription factor (Glyma03g29240.1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006576818.1 | 0.0 | AP2-like ethylene-responsive transcription factor At2g41710 isoform X1 | ||||
Refseq | XP_028225288.1 | 0.0 | AP2-like ethylene-responsive transcription factor At2g41710 isoform X2 | ||||
Swissprot | Q8GWK2 | 1e-165 | AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710 | ||||
TrEMBL | A0A445LCH3 | 0.0 | A0A445LCH3_GLYSO; AP2-like ethylene-responsive transcription factor isoform A | ||||
TrEMBL | I1JNC3 | 0.0 | I1JNC3_SOYBN; AP2-EREBP transcription factor | ||||
STRING | GLYMA03G29240.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6007 | 29 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41710.1 | 1e-153 | AP2 family protein |
Publications ? help Back to Top | |||
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