PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN07221.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | GATA | ||||||||
Protein Properties | Length: 207aa MW: 23828.1 Da PI: 8.5798 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 53.6 | 3e-17 | 141 | 173 | 1 | 33 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33 Cs+C ++kTp+WR gp g tLCnaCG++++ KHN07221.1 141 CSHCDAIKTPQWRTGPFGRNTLCNACGIRFKAG 173 ******************************965 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 1.3E-13 | 135 | 185 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.05E-14 | 136 | 196 | No hit | No description |
PROSITE profile | PS50114 | 11.569 | 139 | 171 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 3.9E-14 | 139 | 173 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 3.80E-14 | 140 | 191 | No hit | No description |
Pfam | PF00320 | 4.5E-15 | 141 | 173 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 141 | 166 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MVIANYGFLE HPLCVPQDSL ECLGMMNWEG MDSIDSMFST PWESEKERLE QPEKDKTERK 60 SFTDVSNNQA NHMSLLTRLD DESNLAAEKS QTKILKTKNI AARSLSKCKI DFLNSTQSGR 120 DAKIWEKRCG HKDARIWERR CSHCDAIKTP QWRTGPFGRN TLCNACGIRF KAGKLYPEYR 180 PADSPTFDVS KHSNVHKEIM KMRNHLS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN07221.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006574026.1 | 1e-156 | GATA transcription factor 9 | ||||
Refseq | XP_028229390.1 | 1e-156 | GATA transcription factor 9-like | ||||
TrEMBL | A0A0B2PD17 | 1e-155 | A0A0B2PD17_GLYSO; GATA transcription factor 3 | ||||
TrEMBL | A0A0R0L803 | 1e-155 | A0A0R0L803_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA01G10390.1 | 1e-105 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF34985 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34680.2 | 3e-30 | GATA transcription factor 3 |
Publications ? help Back to Top | |||
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