PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN07151.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | B3 | ||||||||
Protein Properties | Length: 254aa MW: 28912.9 Da PI: 8.1392 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 41.6 | 2.2e-13 | 22 | 107 | 8 | 99 |
-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +l++g+l lpk+f++++g + s + l+ ++g +W++ +k +g+++++kGWke++ L+ g ++F+++g+s f v++f++ KHN07151.1 22 RTSLAHGILKLPKDFTTKYGDS--MSNLVFLNPPDGIEWKICW--TKLDGKIWFEKGWKEYATYYSLDHGHLLLFQYQGTSHF--DVHIFDN 107 56788999***********877..566788888*******999..*********************************99999..9999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.73E-20 | 13 | 108 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.1E-19 | 14 | 108 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.40E-12 | 15 | 106 | No hit | No description |
PROSITE profile | PS50863 | 11.815 | 15 | 108 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.1E-10 | 16 | 108 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.6E-10 | 23 | 107 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 9.9E-5 | 210 | 254 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.46E-5 | 212 | 253 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MTSSHNKHPL PTAVHFFKII LRTSLAHGIL KLPKDFTTKY GDSMSNLVFL NPPDGIEWKI 60 CWTKLDGKIW FEKGWKEYAT YYSLDHGHLL LFQYQGTSHF DVHIFDNSAV EVDYPSSPGT 120 RDGKERHVEI SDDSVEILDA QFSCQKTRVK STVPSPQPSK EMKFGPTTNV ERSPRVNLHQ 180 HVQTGKEGKG IFNTECPKVE QLTSTTLKKA TTFRLVMKPS FINGEYLEIP PQFAEQHLQK 240 THAVVLLENL DGKT |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN07151.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028196683.1 | 1e-168 | B3 domain-containing protein LOC_Os12g40080-like | ||||
TrEMBL | A0A0B2PCV0 | 0.0 | A0A0B2PCV0_GLYSO; B3 domain-containing transcription factor VRN1 | ||||
STRING | GLYMA13G05926.1 | 1e-128 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 3e-25 | B3 family protein |
Publications ? help Back to Top | |||
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