PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN07132.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | TCP | ||||||||
Protein Properties | Length: 368aa MW: 40666.4 Da PI: 8.0866 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 100 | 4.2e-31 | 52 | 166 | 2 | 89 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.........eaesssssasnsssg... 88 g+kdrhsk++T +g+RdRRvRls+++a+ ++dLqd+LG+ ++sk ++WLl++ak++i+el+ ++ ++ +++ +++s s ++s g KHN07132.1 52 FGGKDRHSKVCTIRGLRDRRVRLSVPTAIHLYDLQDRLGLNQPSKVVDWLLNAAKHEIDELPPLPIPPGNFTlgypslvscNEVSTSREGS----Gqnt 146 689*************************************************************888886665543333113333333333....1234 PP TCP 89 ...................k 89 + KHN07132.1 147 llwkpksgemvsddkanwmN 166 46655555554332211110 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.2E-28 | 54 | 175 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 30.548 | 54 | 112 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 368 aa Download sequence Send to blast |
MINSTKEADF PLKQEGLSSG DHEKAKAPST SSSSSQWLKL KDPRIVRVSR AFGGKDRHSK 60 VCTIRGLRDR RVRLSVPTAI HLYDLQDRLG LNQPSKVVDW LLNAAKHEID ELPPLPIPPG 120 NFTLGYPSLV SCNEVSTSRE GSGQNTLLWK PKSGEMVSDD KANWMNRSEG DDDNNHNNSN 180 GKEGSNNNIC HGGTLVLPNN LLPRPNHPSF LSLMNIMPSL GYQWEPNNSA HDVNIGQWQN 240 HGFLNQTDVH SINVVPFPST LALSTGSDTT TTSQILVCPP HGATTQPYFP SSHHVAAMEM 300 NARQINHYQM LSSSSHQNLL ANSLNPSSQQ LMSQSEKLPF SLGIRPKLFH SPNRSESHSQ 360 KDQDLPSK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 5e-18 | 59 | 113 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 5e-18 | 59 | 113 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN07132.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028195658.1 | 0.0 | transcription factor TCP13-like | ||||
Refseq | XP_028195659.1 | 0.0 | transcription factor TCP13-like | ||||
Refseq | XP_028195660.1 | 0.0 | transcription factor TCP13-like | ||||
Refseq | XP_028195661.1 | 0.0 | transcription factor TCP13-like | ||||
Refseq | XP_028195662.1 | 0.0 | transcription factor TCP13-like | ||||
TrEMBL | A0A0B2PHV5 | 0.0 | A0A0B2PHV5_GLYSO; Transcription factor TCP13 | ||||
STRING | GLYMA19G03786.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF932 | 34 | 119 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02150.1 | 8e-39 | plastid transcription factor 1 |
Publications ? help Back to Top | |||
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