PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN06963.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TCP
Protein Properties Length: 511aa    MW: 56027.5 Da    PI: 7.1255
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN06963.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP119.93e-37682272134
         TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......................ssssasec.eaes 77 
                  g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWL+++a +ai el+++                      ++++++ + +a+ 
  KHN06963.1  68 SGGKDRHSKVMTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKAASEAISELPSLnnpfpdtpkqpsdekrptsgggQQQQQQGFdDADG 166
                 689*************************************************************99998887554444433333321111111122233 PP

         TCP  78 ssssasnsssgkaaksaakskksqksaasalnlak....esrakarararertrekmrikn 134
                 + + ++n+s++ + +++a+s+ s++s+ s l+l++      r kar+rarer ++++ +++
  KHN06963.1 167 DTNYQQNQSQNLSLSKSACSSTSETSKGSGLSLSRseirVNRVKARERARERAAKEKEKEK 227
                 3333334445566666667777777777777777753335669********6555554443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036347.7E-4369225IPR005333Transcription factor, TCP
PROSITE profilePS5136931.41570128IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.946205223IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MEEDEIQACK FPRVGNGRSS DQYQEEEEEG DLRRKGVGGG GGSDASTNHF HQSSWHYSSR  60
IIRVSRASGG KDRHSKVMTS KGLRDRRVRL SVTTAIQFYD LQDRLGYDQP SKAVEWLIKA  120
ASEAISELPS LNNPFPDTPK QPSDEKRPTS GGGQQQQQQG FDDADGDTNY QQNQSQNLSL  180
SKSACSSTSE TSKGSGLSLS RSEIRVNRVK ARERARERAA KEKEKEKEKE SDFNIAHHHH  240
HHNVNNMSHT ASFTELLTGG IGSTVTVNPN TTTTTTTTAT SPNGSSVHQI HEGHDHEANL  300
FNKGSQQQQQ QQHHHWSQTV TPMDYFSAGL LVGPSSSAST QQHQSSGQFQ LGHGHAHAHA  360
LSISPFSGEN HSEQMQHFSF MPDHLNNMPS SAASASQHSE GDNNNYNLNF SISSSGLAGY  420
NRGTLQSNSP SSSFLPLLQR FQPLVDGSSN LPFFIGAAPP SSAPPTMDNN NSNNSNNHHH  480
LQFSPIFDGR LQLCYGDGTR QHSDHKGKGK N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-2375129155Putative transcription factor PCF6
5zkt_B1e-2375129155Putative transcription factor PCF6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN06963.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0769921e-174AB076992.1 Pueraria montana var. lobata PlCYC4 gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003547199.10.0transcription factor TCP2
RefseqXP_006597516.10.0transcription factor TCP2
RefseqXP_006597517.10.0transcription factor TCP2
RefseqXP_006597518.10.0transcription factor TCP2
RefseqXP_006597521.10.0transcription factor TCP2
RefseqXP_014623378.10.0transcription factor TCP2
RefseqXP_014623379.10.0transcription factor TCP2
RefseqXP_014623380.10.0transcription factor TCP2
RefseqXP_014623381.10.0transcription factor TCP2
RefseqXP_014623383.10.0transcription factor TCP2
RefseqXP_014623384.10.0transcription factor TCP2
RefseqXP_014623385.10.0transcription factor TCP2
RefseqXP_028202361.10.0transcription factor TCP2-like
RefseqXP_028202362.10.0transcription factor TCP2-like
RefseqXP_028202363.10.0transcription factor TCP2-like
RefseqXP_028202364.10.0transcription factor TCP2-like
RefseqXP_028202365.10.0transcription factor TCP2-like
RefseqXP_028202366.10.0transcription factor TCP2-like
RefseqXP_028202367.10.0transcription factor TCP2-like
TrEMBLA0A0B2PH860.0A0A0B2PH86_GLYSO; Transcription factor TCP2
TrEMBLK7MAH50.0K7MAH5_SOYBN; Uncharacterized protein
STRINGGLYMA15G09910.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40193156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.21e-41TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]