PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN06901.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 406aa    MW: 44568.4 Da    PI: 8.371
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN06901.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.33.8e-15197242555
                 HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 hn+ Er+RRdriN+++  L++l+P+a      K +Ka++L ++++Y+k+Lq
  KHN06901.1 197 HNQSERKRRDRINQKMKALQRLVPNA-----NKTDKASMLDEVINYLKQLQ 242
                 9************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.51E-16186246No hitNo description
SuperFamilySSF474591.57E-18190252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.168192241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-17197251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-12197242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-16198247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0016607Cellular Componentnuclear speck
GO:0003690Molecular Functiondouble-stranded DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MSNDYYLINR SNYDRISELI WENGQLSIHG LGGLQPTNPT QEKPISSGAH DTLESIVQHA  60
TFQRYQPSKF TREEGHAPTS NSKNNNSIGA PYYGGEVQGV LSSTRKRTWS NANNSMLEEC  120
DILSGCASAG ATFCRDNDTT MMTWVSLDQS GRSLKTMEED SACHCGSEIR DNQDDRDSKA  180
EVGQSNSKRR SRTAAIHNQS ERKRRDRINQ KMKALQRLVP NANKTDKASM LDEVINYLKQ  240
LQAQIQMMNM TSMPQMMVPL AMQQQLQMSM LARMGVAGLG MGMGMNMAAA AQTAGGPIRS  300
LPQFIQPTTT TVCAPPPATA PVFVAPSFMM PPSMIQAPPK PQQLPASSAS IASIHLPHPY  360
SAAGLTQPIN MDILSNMAAL YQQQISQNNH QALSSSMPQP HHEQGR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1187204KRRSRTAAIHNQSERKRR
2200205ERKRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00571DAPTransfer from AT5G61270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN06901.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006581990.10.0transcription factor PIF7 isoform X1
RefseqXP_028237308.10.0transcription factor PIF7-like isoform X1
TrEMBLA0A0B2PC870.0A0A0B2PC87_GLYSO; Transcription factor PIF7
STRINGGLYMA06G21495.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129992432
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61270.16e-38phytochrome-interacting factor7
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]