PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN06806.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 358aa MW: 39420.7 Da PI: 4.5746 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32 | 2.2e-10 | 280 | 320 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR+riN+++ L+ l+P+ +K++ +++Le+Av+Y+k Lq KHN06806.1 280 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 320 9******************97.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.148 | 270 | 319 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.97E-14 | 274 | 335 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.3E-11 | 276 | 325 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.3E-12 | 276 | 329 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.88E-12 | 279 | 324 | No hit | No description |
Pfam | PF00010 | 1.1E-7 | 280 | 320 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0016049 | Biological Process | cell growth | ||||
GO:0048766 | Biological Process | root hair initiation | ||||
GO:0016787 | Molecular Function | hydrolase activity | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 358 aa Download sequence Send to blast |
MEPVQLISEE WGSLCGFHTT EEADFMAQLF GCNTLVTEKH CGNTTLGFWP GHDESTIVAM 60 TDTNSNSYLP PNVTDTNFLC FSQGSSSSTD NSGNNIFSIT SSGAYSCDPE ANFDSVSMVL 120 CLGDAKFSPH SFQCDDNSSQ QINENTDEES SLDPWKLAIA DNNLQAKREY EMMVSEPVEV 180 DRSRNLENLA KRLKSSIEVS KTLRSAKSGK NSKSASVSND EDDRSLSLQA QRNSCFSQSD 240 SNAYLEPNGG ASKDPAPPNL HRKSRATTGA ATDPQSLYAR KRRERINERL RILQNLVPNG 300 TKVDISTMLE EAVQYVKFLQ LQIKLLSSDD LWMYAPIAYN GINIGLDLSI SPTKGISM |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN06806.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235177 | 0.0 | AC235177.1 Glycine max strain Williams 82 clone GM_WBb0007H11, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028182634.1 | 0.0 | transcription factor bHLH84-like | ||||
TrEMBL | A0A445ISW6 | 0.0 | A0A445ISW6_GLYSO; Transcription factor bHLH85 | ||||
STRING | GLYMA10G40360.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF807 | 33 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G14760.1 | 3e-41 | bHLH family protein |
Publications ? help Back to Top | |||
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