PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN06792.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | FAR1 | ||||||||
Protein Properties | Length: 809aa MW: 93169.4 Da PI: 7.4941 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 88.8 | 7.5e-28 | 48 | 135 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY+eYAk++GF++++++s++sk+++e+++++f Cs++g + e+++ ++r+ ++++t+Cka+++vk++ dgkw ++++ +eHnHel p KHN06792.1 48 SFYQEYAKSMGFTTSIKNSRRSKKTKEFIDAKFACSRYGVTPESDSG---SSRRPSVKKTDCKACMHVKRKPDGKWIIHEFIKEHNHELLP 135 5****************************************999888...7788889*******************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 6.1E-25 | 48 | 135 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.3E-29 | 255 | 348 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.211 | 535 | 571 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 9.7E-6 | 537 | 570 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 2.2E-7 | 546 | 573 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010018 | Biological Process | far-red light signaling pathway | ||||
GO:0042753 | Biological Process | positive regulation of circadian rhythm | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 809 aa Download sequence Send to blast |
MGDALNEVQH RGGAPAASPK RDIALLEGDK DFELHNGIEF ESHEAAYSFY QEYAKSMGFT 60 TSIKNSRRSK KTKEFIDAKF ACSRYGVTPE SDSGSSRRPS VKKTDCKACM HVKRKPDGKW 120 IIHEFIKEHN HELLPALAYH FRIHRNMKLA EKNNIDILHA VSERTRKMYV EMSRQSSGCQ 180 NIGSFMGDIN YQFDRGQYLA LDEGDAQVML EYFKHVQKES PNFFYSIDLN EEQRLRNLFW 240 IDAKSINDYL SFNDVVSFDT TYIKSNDKLP FAPFVGVNHH SQPVLLGCAL LADETKPTFV 300 WLMKTWLRAM GGQAPKVIIT DQDTTLKTAI EEVFPNVRHC FSLWHILERI PENLSFVIKK 360 HQNFVRKFNK CIFKSWTDEQ FDMRWWKMVT RCELHDDIWF QSLYEDRKKW VPTYMGDTFL 420 AGMSTPQRSE SMNSFFDKYI HKKITLKEFV KQYGIILQNR YDEEAIADFD TLHKQPALKS 480 PSPWEKQMST VYTHAIFKKF QVEVLGVAGC QSRIEAGDGT IAKFIVQDYE KDEEFLVTWN 540 ELSSEVSCFC RLFEYKGFLC RHGLSVLQRC GCSSVPSHYI LKRWTKDAKI KESMADRTRR 600 TQTRVQRYND LCKRAIDLSE EGSLSEENYN VVFRALVDAL KNCVLVNNSN NNGAETSSNA 660 YGHREAEENQ VPLALKLNKK RNAARKRKAQ LEQDVILVDA QDTLQQMDNL SSDAITLNGY 720 YGTQQNVQGL VQLNLMEPPQ DGYYVNQHSM QGLGPLNSMG PSHDGFFGTQ QGIHGLGGQL 780 EFRPATTFGY SLHQDEPDPQ FHGNSSRNT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269|PubMed:11889039, ECO:0000269|PubMed:12753585, ECO:0000269|PubMed:18033885, ECO:0000269|PubMed:22634759}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00434 | DAP | Transfer from AT4G15090 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN06792.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. {ECO:0000269|PubMed:18033885}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235177 | 0.0 | AC235177.1 Glycine max strain Williams 82 clone GM_WBb0007H11, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006589623.1 | 0.0 | protein FAR-RED IMPAIRED RESPONSE 1 isoform X2 | ||||
Refseq | XP_028185707.1 | 0.0 | protein FAR-RED IMPAIRED RESPONSE 1-like isoform X2 | ||||
Swissprot | Q9SWG3 | 0.0 | FAR1_ARATH; Protein FAR-RED IMPAIRED RESPONSE 1 | ||||
TrEMBL | I1LEG3 | 0.0 | I1LEG3_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA10G40510.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF40 | 30 | 530 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G15090.1 | 0.0 | FAR1 family protein |