PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN06779.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HB-PHD
Protein Properties Length: 849aa    MW: 93346.2 Da    PI: 4.7795
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN06779.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox43.94.1e-147157601156
                 HHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox  11 qleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  +++L + F++n+yp+++++e LA++lgLt +qV  WF N R   +
  KHN06779.1 715 VVQRLHKSFKENQYPDRTTKESLAQELGLTYQQVAKWFGNTRWSFR 760
                 6799**************************************8766 PP
2PHD37.17.1e-13372427151
                 SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
         PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                 +C+ C++    ++++++lCdg C++ fH+ Cl+++  +e++p g   wlC+ C++k
  KHN06779.1 372 FCAKCQSkeLSTNNDIILCDGvCDRGFHQLCLDPPMLTEDIPPGdeGWLCPGCDCK 427
                 699***977777********77********************9999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579033.32E-13362430IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.5E-12369426IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.798370427IPR019787Zinc finger, PHD-finger
CDDcd155041.94E-28372424No hitNo description
PfamPF006282.1E-10372427IPR019787Zinc finger, PHD-finger
SMARTSM002496.9E-10372425IPR001965Zinc finger, PHD-type
PROSITE patternPS013590373424IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS5007113.604702762IPR001356Homeobox domain
SMARTSM003895.0E-13704766IPR001356Homeobox domain
SuperFamilySSF466891.41E-13705765IPR009057Homeodomain-like
PfamPF000461.1E-11715760IPR001356Homeobox domain
CDDcd000864.82E-13716763No hitNo description
Gene3DG3DSA:1.10.10.602.8E-14716767IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 849 aa     Download sequence    Send to blast
MSEYFGFNLL GSHSDYSGGC YGGTCFLRTM ASPTGELTSH NDGTTDRMGT EQCELSEKTP  60
QIGSEGLENE QKELGTELTS SVIEEKSNQV SAIVTENAVI QLPEPLQHDL QKNCQTVEGS  120
CLEQSTVEKV TVDLSNDKPE NKCKPLSENV QSEPVESIPA VVVEGQMQSN PSQANMSSVN  180
ELLDQPSGDA VNNISSNCSE KMSNSPTHSQ SRRKGKKNSK LLKKYMLRSL GSSDRALRSR  240
TKEKPKEPEP TSNLVDGNNN GVKRKSGRKK KKRKEEGITD QFSRIRSHLR YLLNRISYEN  300
SLIDAYSGEG WKGYSIEKLK PEKELQRAKS EILRRKLKIR DLFQNLDSLC AEGKFPESLF  360
DSAGEIDSED IFCAKCQSKE LSTNNDIILC DGVCDRGFHQ LCLDPPMLTE DIPPGDEGWL  420
CPGCDCKDDC MDLVNDSFGT SLSISDTWER VFPEAASFAG NNMDNNSGVP SDDSDDDDYN  480
PNGPDDVKVE GDESSSDESE YASASEKLEG GSHEDQYLGL PSEDSDDGDY DPDAPDVECK  540
VNEKSSSSDF TSDSEDLAAA IEDNTSPGQD GGISSSKKKG KVGKKLSLPD ELSSLLEPDS  600
GQEAPTPVSG KRHVERLDYK KLYEETYHSD TSDDEDWNDT AAPSGKKKLT GNVTPVSPNG  660
NASNNSIHTP KRNAHQNNVE NTNNSPTKSL EGCSKSGSRD KKSGSSAHKR LGEAVVQRLH  720
KSFKENQYPD RTTKESLAQE LGLTYQQVAK WFGNTRWSFR HSSQMETNSG RNASQQVTDG  780
RAENEGEKEC ELISPEFSGE KSKTPNSRKR KHLSEPLSEA QLDINGSAAS SPNVHLTQIG  840
NKMKTRKRK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1215223KKNSKLLKK
2267272RKKKKR
3267273RKKKKRK
4267274RKKKKRKE
5268273KKKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN06779.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0909550.0BT090955.1 Soybean clone JCVI-FLGm-5D8 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028186148.10.0homeobox protein HAT3.1-like
TrEMBLA0A445IT340.0A0A445IT34_GLYSO; TIP41-like protein isoform B
STRINGGLYMA10G40641.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84373141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.11e-94Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]