PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN06667.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 208aa MW: 22981.5 Da PI: 4.8823 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 42.8 | 1.3e-13 | 40 | 77 | 1 | 42 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeA 42 + y+GVr + +g+Wv+eIr+p++ + r++lg+f t+e+A KHN06667.1 40 PVYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPTPEMA 77 68*****998.**********843...6************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.3E-7 | 40 | 77 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.9E-20 | 41 | 80 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.463 | 41 | 99 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.7E-13 | 41 | 93 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.27E-13 | 41 | 79 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.1E-8 | 42 | 53 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.27E-18 | 42 | 77 | No hit | No description |
PRINTS | PR00367 | 1.1E-8 | 64 | 80 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MRVSAQNSTS FLPSSPSSSS PPLSSESKTE KRNRESNNHP VYRGVRMRNW GKWVSEIREP 60 RKKSRIWLGT FPTPEMAGVS LASRDVQAAA AKAAHMDLPS SSSSISLSLG STTPSSSSSS 120 LSSLASTADL LLLSTASEEL SEIIELPRLE TTSYELGNEF VFMDSQDTWM YQPPIPWLHT 180 TYDGSDANEF AVPESRVMTN FEGFLWDY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN06667.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235444 | 0.0 | AC235444.1 Glycine max strain Williams 82 clone GM_WBb0158O04, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028210366.1 | 2e-97 | ethylene-responsive transcription factor TINY-like | ||||
Swissprot | Q9LYD3 | 1e-41 | DREB3_ARATH; Dehydration-responsive element-binding protein 3 | ||||
TrEMBL | A0A0B2PGH5 | 1e-147 | A0A0B2PGH5_GLYSO; Dehydration-responsive element-binding protein 3 | ||||
STRING | GLYMA17G27520.2 | 1e-96 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF192 | 34 | 263 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11590.1 | 3e-31 | ERF family protein |
Publications ? help Back to Top | |||
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