PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN06626.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | HSF | ||||||||
Protein Properties | Length: 408aa MW: 46778.7 Da PI: 6.2733 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 114.6 | 6.5e-36 | 75 | 166 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Flkk++e++ed++++ ++sws++ +sf+v+d++ef+k++LpkyFkhsnf+SFvRQLn+YgF+kv++++ weF+++ F+ gkk+ll++i+ KHN06626.1 75 FLKKTFEMVEDPHTDPIVSWSQTRDSFIVWDSHEFSKSLLPKYFKHSNFSSFVRQLNTYGFRKVDSDR---------WEFANEGFQGGKKHLLKNIR 162 9****************************************************************999.........******************** PP XXXX CS HSF_DNA-bind 99 rkks 102 r+ + KHN06626.1 163 RRCK 166 *975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 4.1E-59 | 71 | 164 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 3.4E-34 | 71 | 164 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 2.4E-38 | 71 | 164 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 4.3E-32 | 75 | 164 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.4E-19 | 75 | 98 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.4E-19 | 113 | 125 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 114 | 138 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.4E-19 | 126 | 138 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 408 aa Download sequence Send to blast |
MGEEEVTRVK AELFQDSEGD PHDDVLSESK DSGVTTEEVT MTTHVVKEEI DDGAVNGSSS 60 PKPMEGLHEV GPPPFLKKTF EMVEDPHTDP IVSWSQTRDS FIVWDSHEFS KSLLPKYFKH 120 SNFSSFVRQL NTYGFRKVDS DRWEFANEGF QGGKKHLLKN IRRRCKYNKL HQGAFNMMKP 180 CVDSEVEKLK KDQNILKVEI LKLRQQQENS HVQLTNVQER IRCAEVKQYQ MMYFLTRMAR 240 RPAFVEQLVH KIRRKREIDG NEMVKRPRLM GTPCHVPFPK TMETTPDFDH RHQQGHKQFA 300 TLQSELNGLL SETVNTGRME HPTPSPLEDE LCSSLQGLRA HGISRASAQD ASSSAYHVMS 360 EKLMRENSIV DEELDVNDSN IYLELEDLIT KPTDWSVGSA SGLVEQTS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 2e-23 | 40 | 164 | 2 | 129 | Heat shock factor protein 1 |
5d5v_B | 2e-23 | 40 | 164 | 2 | 129 | Heat shock factor protein 1 |
5d5v_D | 2e-23 | 40 | 164 | 2 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN06626.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003541290.1 | 0.0 | heat stress transcription factor A-2 | ||||
Refseq | XP_028196989.1 | 0.0 | heat stress transcription factor A-2-like | ||||
TrEMBL | A0A0B2PBI1 | 0.0 | A0A0B2PBI1_GLYSO; Heat stress transcription factor A-2 | ||||
TrEMBL | I1LY11 | 0.0 | I1LY11_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA13G16510.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10676 | 29 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26150.1 | 5e-82 | heat shock transcription factor A2 |
Publications ? help Back to Top | |||
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