PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN06623.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 510aa    MW: 57567.4 Da    PI: 7.5941
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN06623.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.24.5e-11314360354
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 + h + ErrRR+++N++f+ Lr llP+      +K  K +iL+ A + ++sL
  KHN06623.1 314 QHHMITERRRREKLNESFQALRALLPPG-----TKKAKGTILTTAKDTMRSL 360
                 67999*********************97.....7999999999999888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.738311360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-13311380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-14312380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.77E-10313365No hitNo description
PfamPF000101.4E-8314360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-9317366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MDGVFTLPKA ARADFFRSLV QSFGCTYVCL WQYDSNLSNL FFFDGYCDVT NNQPSSYLGS  60
VAERLFHQYR ALTFDVNHEC VPGVAFRNQL PYIELQLLDL LRLTSTEIQT QFFQIAVFMG  120
CKNGEIELGF SNISQVIKKT ILPSSSFCFM SLSTGSPDQC SSSLLLSSIP GTSQFHFPQT  180
LPTQTHQQQS IQEIDLAPVI PSYFPTPDGE HEAIVRALMS VMSPLSSSSS TSQQHQPRQI  240
LPNYTSIVHP GATAFNTYRP DTMNPNITPY MGSNFRRQSP QNRSFAFFTN LNLMRMRELV  300
SQPASRPIST QHQQHHMITE RRRREKLNES FQALRALLPP GTKKAKGTIL TTAKDTMRSL  360
MDEIEKINLR NQQLMAVLSA KETTVSATST KENKAKPSSS SSNERLNVLV SAVLESSSLS  420
EERMVDVQVT LRGESSRVDV LIRLLEFLER VQNVNLVSMY ANNHIIGGTT INQLTFRLRI  480
IEGNEWDEHA LEEAVRRVVA DTIQWKPLDQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1319324ERRRRE
2320325RRRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN06623.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028196200.10.0putative transcription factor bHLH041
TrEMBLA0A0B2PG730.0A0A0B2PG73_GLYSO; Putative transcription factor bHLH041
STRINGGLYMA13G16480.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41503354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.15e-44bHLH family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]